Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00958

Experiment: PYE 0.5x 30C survival rep2 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 30C survival rep2 12 days
1,034,962	+		CCNA_00957	0.33	-0.2
1,034,997	+		CCNA_00957	0.35	+0.7
1,035,037	+		CCNA_00957	0.38	-1.3
1,035,037	+		CCNA_00957	0.38	+0.5
1,035,048	+		CCNA_00957	0.38	-0.1
1,035,048	+		CCNA_00957	0.38	+0.4
1,035,065	+		CCNA_00957	0.40	+0.8
1,035,065	+		CCNA_00957	0.40	+0.7
1,035,073	-		CCNA_00957	0.40	-1.4
1,035,073	-		CCNA_00957	0.40	-0.6
1,035,073	-		CCNA_00957	0.40	-1.2
1,035,076	+		CCNA_00957	0.40	-3.0
1,035,078	-		CCNA_00957	0.40	-0.7
1,035,161	+		CCNA_00957	0.46	-0.3
1,035,206	-		CCNA_00957	0.49	-0.6
1,035,276	+		CCNA_00957	0.54	-0.8
1,035,278	+		CCNA_00957	0.54	-2.2
1,035,304	-		CCNA_00957	0.56	-0.2
1,035,322	+		CCNA_00957	0.57	+0.4
1,035,358	+				+0.8
1,035,364	+		CCNA_00957	0.60	-0.1
1,035,406	-		CCNA_00957	0.63	-1.3
1,035,426	-				+0.8
1,035,462	-		CCNA_00957	0.66	-1.5
1,035,464	-		CCNA_00957	0.67	+1.5
1,035,495	-		CCNA_00957	0.69	+0.4
1,035,523	+		CCNA_00957	0.71	-0.1
1,035,534	+		CCNA_00957	0.71	+0.8
1,035,564	+		CCNA_00957	0.73	+0.4
1,035,564	+		CCNA_00957	0.73	-0.1
1,035,572	-		CCNA_00957	0.74	-1.6
1,035,572	-		CCNA_00957	0.74	+0.5
1,035,614	-		CCNA_00957	0.77	-0.5
1,035,625	+		CCNA_00957	0.77	-0.8
1,035,692	+		CCNA_00957	0.82	+0.7
1,035,692	+		CCNA_00957	0.82	-0.6
1,035,700	-		CCNA_00957	0.82	+0.2
1,035,724	+		CCNA_00957	0.84	-0.0
1,035,760	+		CCNA_00957	0.87	-0.3
1,035,768	-		CCNA_00957	0.87	-0.2
1,035,806	-		CCNA_00957	0.90	+0.4
1,035,920	+				+0.3
1,035,945	+				+1.1
1,035,945	+				+0.0
1,035,989	+				-1.5
1,035,989	+				-0.6
1,035,989	+				+0.9
1,035,989	+				-0.2
1,035,989	+				+0.0
1,035,989	+				+0.4
1,035,989	+				-0.4
1,035,997	-				-1.2
1,035,997	-				-0.8
1,035,997	-				-0.7
1,035,997	-				+0.4
1,036,005	+				-0.2
1,036,015	+				-0.5
1,036,083	-				-0.6
1,036,239	+		CCNA_00958	0.21	+0.2
1,036,253	+		CCNA_00958	0.22	-0.8
1,036,254	+		CCNA_00958	0.23	-0.9
1,036,315	+		CCNA_00958	0.27	+0.0
1,036,316	-		CCNA_00958	0.27	+0.4
1,036,317	-		CCNA_00958	0.27	-1.2
1,036,323	-		CCNA_00958	0.28	-0.6
1,036,328	-		CCNA_00958	0.28	-0.5
1,036,328	-		CCNA_00958	0.28	+0.4
1,036,333	-		CCNA_00958	0.28	-1.7
1,036,381	+		CCNA_00958	0.32	-1.0
1,036,395	+		CCNA_00958	0.33	-2.3
1,036,435	+		CCNA_00958	0.36	-1.8
1,036,436	+		CCNA_00958	0.36	-1.0
1,036,443	-		CCNA_00958	0.37	+0.2
1,036,444	-		CCNA_00958	0.37	-2.2
1,036,444	-		CCNA_00958	0.37	-2.6
1,036,483	+		CCNA_00958	0.40	+0.8
1,036,483	+		CCNA_00958	0.40	+0.0
1,036,483	+		CCNA_00958	0.40	-1.5
1,036,483	+		CCNA_00958	0.40	-1.2
1,036,489	-		CCNA_00958	0.40	-0.1
1,036,491	-		CCNA_00958	0.40	-0.0
1,036,491	-		CCNA_00958	0.40	-0.6
1,036,491	-		CCNA_00958	0.40	-0.5
1,036,491	-		CCNA_00958	0.40	+0.2
1,036,491	-		CCNA_00958	0.40	-0.2
1,036,491	-		CCNA_00958	0.40	-0.3
1,036,491	-		CCNA_00958	0.40	-0.2
1,036,491	-		CCNA_00958	0.40	-0.4
1,036,491	-		CCNA_00958	0.40	-0.8
1,036,491	-		CCNA_00958	0.40	-1.0
1,036,491	-		CCNA_00958	0.40	+0.5
1,036,538	+		CCNA_00958	0.44	-0.4
1,036,609	+		CCNA_00958	0.49	-0.2
1,036,626	+		CCNA_00958	0.51	+0.1
1,036,639	+		CCNA_00958	0.52	+0.3
1,036,671	+		CCNA_00958	0.54	+0.2
1,036,679	-		CCNA_00958	0.55	-0.6
1,036,679	-		CCNA_00958	0.55	-0.2
1,036,681	-		CCNA_00958	0.55	+1.5
1,036,719	-		CCNA_00958	0.58	-0.9
1,036,772	-		CCNA_00958	0.62	-0.8
1,036,781	+		CCNA_00958	0.62	-0.2
1,036,786	+		CCNA_00958	0.63	+0.2
1,036,789	-		CCNA_00958	0.63	-1.6
1,036,793	+		CCNA_00958	0.63	-1.9
1,036,793	+		CCNA_00958	0.63	+0.4
1,036,796	-		CCNA_00958	0.63	-0.8
1,036,811	-		CCNA_00958	0.65	+2.4
1,036,882	+		CCNA_00958	0.70	-1.3
1,036,888	+		CCNA_00958	0.70	+0.7
1,036,891	-		CCNA_00958	0.71	-0.2
1,036,904	+		CCNA_00958	0.72	-0.3
1,036,908	-		CCNA_00958	0.72	+0.8
1,036,912	-		CCNA_00958	0.72	+0.8
1,036,970	+		CCNA_00958	0.77	-1.3
1,037,026	+		CCNA_00958	0.81	-1.6
1,037,034	-		CCNA_00958	0.81	+0.7
1,037,088	+		CCNA_00958	0.86	+0.4
1,037,088	+		CCNA_00958	0.86	+0.0
1,037,088	+		CCNA_00958	0.86	+1.4
1,037,088	-		CCNA_00958	0.86	+1.4
1,037,094	+		CCNA_00958	0.86	-0.5
1,037,096	-		CCNA_00958	0.86	+0.2
1,037,096	-		CCNA_00958	0.86	+0.8
1,037,102	-		CCNA_00958	0.87	-1.3
1,037,102	-		CCNA_00958	0.87	+0.0
1,037,102	-		CCNA_00958	0.87	-0.5
1,037,107	-		CCNA_00958	0.87	-2.3
1,037,120	+		CCNA_00958	0.88	-0.5
1,037,124	+		CCNA_00958	0.88	-1.5
1,037,132	-		CCNA_00958	0.89	+1.8
1,037,138	-		CCNA_00958	0.89	-0.6
1,037,149	-				-1.1
1,037,149	-				-0.8
1,037,165	-				+0.0
1,037,205	+				-0.2
1,037,215	+				+0.6
1,037,215	+				-0.2
1,037,245	+				-1.7
1,037,259	-				-0.6
1,037,261	+				-1.1
1,037,269	-				-1.5
1,037,271	+				-0.2
1,037,271	+				-0.6
1,037,284	+				+0.9
1,037,304	+				+0.1
1,037,305	+				+0.2
1,037,323	+				-1.1
1,037,325	-				+0.5
1,037,372	+				-0.2
1,037,380	-				-1.9
1,037,507	+		CCNA_00959	0.16	+0.3
1,037,514	+		CCNA_00959	0.18	-0.0
1,037,515	-		CCNA_00959	0.18	-0.2
1,037,515	-		CCNA_00959	0.18	-0.5
1,037,521	+		CCNA_00959	0.19	+0.5
1,037,521	+		CCNA_00959	0.19	+0.2
1,037,529	-		CCNA_00959	0.20	-0.6
1,037,529	-		CCNA_00959	0.20	+0.0
1,037,537	+		CCNA_00959	0.21	+0.6
1,037,550	-		CCNA_00959	0.23	-1.6
1,037,564	-		CCNA_00959	0.25	+0.6
1,037,597	+		CCNA_00959	0.31	-0.3
1,037,660	+		CCNA_00959	0.40	-0.2
1,037,666	-		CCNA_00959	0.41	-0.5
1,037,668	-		CCNA_00959	0.42	-1.3
1,037,668	-		CCNA_00959	0.42	-1.2
1,037,668	-		CCNA_00959	0.42	-0.7
1,037,673	-		CCNA_00959	0.42	-1.6
1,037,673	-		CCNA_00959	0.42	-1.9
1,037,683	-		CCNA_00959	0.44	-0.0
1,037,684	+		CCNA_00959	0.44	+0.4
1,037,714	-		CCNA_00959	0.49	-0.7
1,037,821	+		CCNA_00959	0.66	-0.1
1,037,830	-		CCNA_00959	0.67	+0.4
1,037,856	+		CCNA_00959	0.71	-0.9
1,037,861	+		CCNA_00959	0.72	-2.1
1,037,861	+		CCNA_00959	0.72	-0.9
1,037,861	+		CCNA_00959	0.72	-0.7
1,037,863	-		CCNA_00959	0.72	-1.3
1,037,869	-		CCNA_00959	0.73	+0.4
1,037,869	-		CCNA_00959	0.73	+0.4
1,037,869	-		CCNA_00959	0.73	-0.6
1,037,878	+		CCNA_00959	0.74	-1.4
1,037,895	-		CCNA_00959	0.77	+1.2
1,037,910	-		CCNA_00959	0.79	-0.5
1,037,910	-		CCNA_00959	0.79	-1.1
1,037,953	-		CCNA_00959	0.86	-0.5
1,037,959	+		CCNA_00959	0.87	+0.5
1,037,975	-		CCNA_00959	0.90	+0.7
1,038,000	+				+1.5
1,038,013	+				+0.0
1,038,023	-				-0.7
1,038,112	-				+0.0
1,038,115	+				-1.0
1,038,128	+		CCNA_00961	0.13	-0.8
1,038,136	-		CCNA_00961	0.15	-1.6
1,038,195	+		CCNA_00961	0.30	-0.8
1,038,195	+		CCNA_00961	0.30	+1.3
1,038,203	-		CCNA_00961	0.32	-0.5
1,038,203	-		CCNA_00961	0.32	-0.1
1,038,203	-		CCNA_00961	0.32	-1.1
1,038,248	-		CCNA_00961	0.43	-2.0
1,038,269	+		CCNA_00961	0.48	-0.1