Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00872

Experiment: PYE 0.5x 30C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00870 and CCNA_00871 are separated by 19 nucleotidesCCNA_00871 and CCNA_00872 overlap by 4 nucleotidesCCNA_00872 and CCNA_00873 are separated by 28 nucleotidesCCNA_00873 and CCNA_00874 overlap by 2 nucleotides CCNA_00870: CCNA_00870 - hypothetical protein, at 950,449 to 950,886 _00870 CCNA_00871: CCNA_00871 - carbon-nitrogen hydrolase family protein, at 950,906 to 951,757 _00871 CCNA_00872: CCNA_00872 - glutaredoxin, at 951,754 to 952,008 _00872 CCNA_00873: CCNA_00873 - amidophosphoribosyltransferase family protein, at 952,037 to 952,834 _00873 CCNA_00874: CCNA_00874 - biotin synthesis protein bioC, at 952,833 to 953,744 _00874 Position (kb) 951 952 953Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 950.759 kb on - strand, within CCNA_00870at 950.777 kb on - strand, within CCNA_00870at 950.829 kb on + strand, within CCNA_00870at 950.837 kb on - strand, within CCNA_00870at 950.859 kb on + strandat 950.884 kb on - strandat 950.887 kb on + strandat 950.895 kb on - strandat 950.895 kb on - strandat 950.895 kb on - strandat 950.903 kb on - strandat 950.905 kb on + strandat 950.923 kb on - strandat 950.936 kb on - strandat 950.941 kb on - strandat 950.967 kb on - strandat 951.014 kb on + strand, within CCNA_00871at 951.038 kb on + strand, within CCNA_00871at 951.047 kb on + strand, within CCNA_00871at 951.062 kb on + strandat 951.062 kb on + strand, within CCNA_00871at 951.102 kb on + strand, within CCNA_00871at 951.112 kb on + strand, within CCNA_00871at 951.120 kb on - strand, within CCNA_00871at 951.120 kb on - strand, within CCNA_00871at 951.182 kb on + strand, within CCNA_00871at 951.182 kb on + strand, within CCNA_00871at 951.182 kb on + strand, within CCNA_00871at 951.190 kb on - strand, within CCNA_00871at 951.218 kb on + strand, within CCNA_00871at 951.218 kb on + strand, within CCNA_00871at 951.224 kb on + strand, within CCNA_00871at 951.226 kb on - strand, within CCNA_00871at 951.226 kb on - strand, within CCNA_00871at 951.259 kb on - strand, within CCNA_00871at 951.269 kb on + strand, within CCNA_00871at 951.280 kb on + strand, within CCNA_00871at 951.288 kb on - strand, within CCNA_00871at 951.294 kb on + strand, within CCNA_00871at 951.330 kb on + strand, within CCNA_00871at 951.374 kb on + strand, within CCNA_00871at 951.379 kb on + strand, within CCNA_00871at 951.379 kb on + strand, within CCNA_00871at 951.387 kb on - strand, within CCNA_00871at 951.393 kb on - strand, within CCNA_00871at 951.395 kb on - strand, within CCNA_00871at 951.411 kb on - strand, within CCNA_00871at 951.444 kb on + strand, within CCNA_00871at 951.482 kb on + strand, within CCNA_00871at 951.510 kb on + strand, within CCNA_00871at 951.510 kb on + strand, within CCNA_00871at 951.550 kb on - strand, within CCNA_00871at 951.552 kb on - strand, within CCNA_00871at 951.575 kb on - strand, within CCNA_00871at 951.575 kb on - strand, within CCNA_00871at 951.575 kb on - strand, within CCNA_00871at 951.637 kb on + strand, within CCNA_00871at 951.665 kb on - strand, within CCNA_00871at 951.683 kb on + strandat 951.683 kb on + strandat 951.683 kb on + strandat 951.691 kb on - strandat 951.695 kb on + strandat 951.703 kb on - strandat 951.716 kb on + strandat 951.717 kb on + strandat 951.727 kb on + strandat 951.735 kb on - strandat 951.740 kb on - strandat 951.742 kb on + strandat 951.742 kb on + strandat 951.742 kb on + strandat 951.750 kb on - strandat 951.750 kb on - strandat 951.775 kb on - strandat 951.780 kb on - strand, within CCNA_00872at 951.781 kb on + strand, within CCNA_00872at 951.805 kb on - strand, within CCNA_00872at 951.864 kb on - strand, within CCNA_00872at 951.899 kb on - strand, within CCNA_00872at 951.941 kb on + strand, within CCNA_00872at 951.971 kb on + strand, within CCNA_00872at 951.979 kb on - strand, within CCNA_00872at 951.985 kb on + strandat 951.991 kb on + strandat 951.993 kb on - strandat 952.004 kb on + strandat 952.012 kb on - strandat 952.025 kb on + strandat 952.033 kb on - strandat 952.036 kb on + strandat 952.038 kb on + strandat 952.046 kb on - strandat 952.082 kb on - strandat 952.127 kb on + strand, within CCNA_00873at 952.137 kb on + strand, within CCNA_00873at 952.148 kb on + strand, within CCNA_00873at 952.148 kb on + strand, within CCNA_00873at 952.148 kb on + strand, within CCNA_00873at 952.148 kb on + strand, within CCNA_00873at 952.156 kb on - strand, within CCNA_00873at 952.181 kb on - strand, within CCNA_00873at 952.185 kb on + strand, within CCNA_00873at 952.214 kb on + strand, within CCNA_00873at 952.215 kb on - strand, within CCNA_00873at 952.215 kb on - strand, within CCNA_00873at 952.220 kb on + strand, within CCNA_00873at 952.228 kb on - strand, within CCNA_00873at 952.243 kb on + strand, within CCNA_00873at 952.243 kb on + strand, within CCNA_00873at 952.251 kb on - strand, within CCNA_00873at 952.275 kb on - strand, within CCNA_00873at 952.294 kb on + strand, within CCNA_00873at 952.378 kb on + strand, within CCNA_00873at 952.386 kb on - strand, within CCNA_00873at 952.386 kb on - strand, within CCNA_00873at 952.416 kb on + strand, within CCNA_00873at 952.417 kb on - strand, within CCNA_00873at 952.440 kb on + strand, within CCNA_00873at 952.504 kb on + strand, within CCNA_00873at 952.504 kb on + strand, within CCNA_00873at 952.512 kb on - strand, within CCNA_00873at 952.512 kb on - strand, within CCNA_00873at 952.512 kb on - strand, within CCNA_00873at 952.512 kb on - strand, within CCNA_00873at 952.512 kb on - strand, within CCNA_00873at 952.527 kb on + strand, within CCNA_00873at 952.560 kb on + strand, within CCNA_00873at 952.560 kb on + strand, within CCNA_00873at 952.560 kb on + strand, within CCNA_00873at 952.566 kb on + strand, within CCNA_00873at 952.567 kb on - strand, within CCNA_00873at 952.568 kb on - strand, within CCNA_00873at 952.608 kb on + strand, within CCNA_00873at 952.613 kb on + strand, within CCNA_00873at 952.622 kb on - strand, within CCNA_00873at 952.624 kb on + strand, within CCNA_00873at 952.656 kb on + strand, within CCNA_00873at 952.702 kb on - strand, within CCNA_00873at 952.702 kb on - strand, within CCNA_00873at 952.707 kb on - strand, within CCNA_00873at 952.739 kb on + strand, within CCNA_00873at 952.740 kb on - strand, within CCNA_00873at 952.770 kb on + strandat 952.777 kb on - strandat 952.782 kb on - strandat 952.822 kb on + strandat 952.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep2 12 days
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950,759 - CCNA_00870 0.71 -0.3
950,777 - CCNA_00870 0.75 +0.2
950,829 + CCNA_00870 0.87 -2.2
950,837 - CCNA_00870 0.89 -0.4
950,859 + -0.5
950,884 - -0.9
950,887 + -1.5
950,895 - +0.3
950,895 - +0.6
950,895 - +1.8
950,903 - +1.0
950,905 + +0.6
950,923 - +0.2
950,936 - +0.4
950,941 - +0.3
950,967 - +0.5
951,014 + CCNA_00871 0.13 +0.3
951,038 + CCNA_00871 0.15 -1.4
951,047 + CCNA_00871 0.17 -2.6
951,062 + -0.0
951,062 + CCNA_00871 0.18 -0.5
951,102 + CCNA_00871 0.23 -0.5
951,112 + CCNA_00871 0.24 -1.9
951,120 - CCNA_00871 0.25 -0.2
951,120 - CCNA_00871 0.25 +0.7
951,182 + CCNA_00871 0.32 -1.8
951,182 + CCNA_00871 0.32 -1.1
951,182 + CCNA_00871 0.32 +2.9
951,190 - CCNA_00871 0.33 +0.3
951,218 + CCNA_00871 0.37 -1.0
951,218 + CCNA_00871 0.37 -1.3
951,224 + CCNA_00871 0.37 -0.5
951,226 - CCNA_00871 0.38 +0.4
951,226 - CCNA_00871 0.38 +0.7
951,259 - CCNA_00871 0.41 +0.6
951,269 + CCNA_00871 0.43 -0.3
951,280 + CCNA_00871 0.44 -0.0
951,288 - CCNA_00871 0.45 -0.9
951,294 + CCNA_00871 0.46 -0.9
951,330 + CCNA_00871 0.50 -1.1
951,374 + CCNA_00871 0.55 -0.9
951,379 + CCNA_00871 0.56 +0.3
951,379 + CCNA_00871 0.56 -1.1
951,387 - CCNA_00871 0.56 +0.1
951,393 - CCNA_00871 0.57 +1.3
951,395 - CCNA_00871 0.57 -1.5
951,411 - CCNA_00871 0.59 +0.3
951,444 + CCNA_00871 0.63 -2.1
951,482 + CCNA_00871 0.68 -0.9
951,510 + CCNA_00871 0.71 -0.5
951,510 + CCNA_00871 0.71 +1.1
951,550 - CCNA_00871 0.76 -0.1
951,552 - CCNA_00871 0.76 +0.2
951,575 - CCNA_00871 0.79 +0.9
951,575 - CCNA_00871 0.79 -0.2
951,575 - CCNA_00871 0.79 -0.3
951,637 + CCNA_00871 0.86 -0.0
951,665 - CCNA_00871 0.89 +2.1
951,683 + -1.7
951,683 + -3.4
951,683 + -1.0
951,691 - -0.9
951,695 + -1.0
951,703 - -0.4
951,716 + +2.3
951,717 + -1.1
951,727 + +0.3
951,735 - +1.2
951,740 - -0.3
951,742 + -0.5
951,742 + -0.5
951,742 + -0.7
951,750 - -0.8
951,750 - -0.0
951,775 - +1.3
951,780 - CCNA_00872 0.10 +1.9
951,781 + CCNA_00872 0.11 -0.1
951,805 - CCNA_00872 0.20 +1.5
951,864 - CCNA_00872 0.43 +2.0
951,899 - CCNA_00872 0.57 +2.1
951,941 + CCNA_00872 0.73 +1.7
951,971 + CCNA_00872 0.85 -0.8
951,979 - CCNA_00872 0.88 +0.5
951,985 + -0.4
951,991 + +1.3
951,993 - +3.3
952,004 + +0.6
952,012 - -0.9
952,025 + +0.7
952,033 - -1.0
952,036 + -0.5
952,038 + -0.9
952,046 - +1.3
952,082 - +2.3
952,127 + CCNA_00873 0.11 +0.7
952,137 + CCNA_00873 0.13 +0.1
952,148 + CCNA_00873 0.14 -0.7
952,148 + CCNA_00873 0.14 -1.2
952,148 + CCNA_00873 0.14 -0.9
952,148 + CCNA_00873 0.14 -0.6
952,156 - CCNA_00873 0.15 -0.4
952,181 - CCNA_00873 0.18 -0.1
952,185 + CCNA_00873 0.19 +0.3
952,214 + CCNA_00873 0.22 +0.6
952,215 - CCNA_00873 0.22 -0.3
952,215 - CCNA_00873 0.22 -0.9
952,220 + CCNA_00873 0.23 -2.2
952,228 - CCNA_00873 0.24 -2.1
952,243 + CCNA_00873 0.26 -0.9
952,243 + CCNA_00873 0.26 +0.9
952,251 - CCNA_00873 0.27 -0.3
952,275 - CCNA_00873 0.30 -1.1
952,294 + CCNA_00873 0.32 -2.4
952,378 + CCNA_00873 0.43 -0.7
952,386 - CCNA_00873 0.44 +0.2
952,386 - CCNA_00873 0.44 -0.4
952,416 + CCNA_00873 0.47 -1.0
952,417 - CCNA_00873 0.48 -1.5
952,440 + CCNA_00873 0.51 -1.3
952,504 + CCNA_00873 0.59 +1.3
952,504 + CCNA_00873 0.59 -0.6
952,512 - CCNA_00873 0.60 -0.9
952,512 - CCNA_00873 0.60 +1.1
952,512 - CCNA_00873 0.60 -2.4
952,512 - CCNA_00873 0.60 -1.9
952,512 - CCNA_00873 0.60 -0.0
952,527 + CCNA_00873 0.61 -0.3
952,560 + CCNA_00873 0.66 -2.1
952,560 + CCNA_00873 0.66 -1.4
952,560 + CCNA_00873 0.66 +2.5
952,566 + CCNA_00873 0.66 +1.3
952,567 - CCNA_00873 0.66 -0.3
952,568 - CCNA_00873 0.67 -0.9
952,608 + CCNA_00873 0.72 -0.6
952,613 + CCNA_00873 0.72 -0.3
952,622 - CCNA_00873 0.73 +0.7
952,624 + CCNA_00873 0.74 -2.5
952,656 + CCNA_00873 0.78 +1.0
952,702 - CCNA_00873 0.83 -1.3
952,702 - CCNA_00873 0.83 +0.3
952,707 - CCNA_00873 0.84 -0.5
952,739 + CCNA_00873 0.88 -1.3
952,740 - CCNA_00873 0.88 +2.3
952,770 + +0.7
952,777 - +0.0
952,782 - +0.4
952,822 + -1.3
952,830 - +0.3

Or see this region's nucleotide sequence