Experiment: PYE 0.5x 30C survival rep2 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00856 and CCNA_00857 are separated by 171 nucleotides CCNA_00857 and CCNA_00858 are separated by 366 nucleotides
CCNA_00856: CCNA_00856 - beta-xylosidase, at 931,733 to 933,355
_00856
CCNA_00857: CCNA_00857 - D-xylose transporter <small>(from data)</small>, at 933,527 to 934,963
_00857
CCNA_00858: CCNA_00858 - TonB-dependent receptor, at 935,330 to 937,543
_00858
Position (kb) 933
934
935 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 932.530 kb on + strand, within CCNA_00856 at 932.619 kb on - strand, within CCNA_00856 at 932.627 kb on - strand, within CCNA_00856 at 932.667 kb on + strand, within CCNA_00856 at 932.667 kb on + strand, within CCNA_00856 at 932.668 kb on + strand, within CCNA_00856 at 932.690 kb on - strand, within CCNA_00856 at 932.698 kb on - strand, within CCNA_00856 at 932.715 kb on - strand, within CCNA_00856 at 932.725 kb on - strand, within CCNA_00856 at 932.725 kb on - strand, within CCNA_00856 at 932.727 kb on + strand, within CCNA_00856 at 932.727 kb on + strand, within CCNA_00856 at 932.727 kb on + strand, within CCNA_00856 at 932.735 kb on - strand, within CCNA_00856 at 932.754 kb on + strand, within CCNA_00856 at 932.770 kb on + strand, within CCNA_00856 at 932.783 kb on - strand, within CCNA_00856 at 932.842 kb on + strand, within CCNA_00856 at 932.844 kb on - strand, within CCNA_00856 at 932.845 kb on + strand, within CCNA_00856 at 932.850 kb on - strand, within CCNA_00856 at 932.860 kb on + strand, within CCNA_00856 at 932.860 kb on + strand, within CCNA_00856 at 932.860 kb on + strand, within CCNA_00856 at 932.867 kb on - strand, within CCNA_00856 at 932.875 kb on + strand, within CCNA_00856 at 932.875 kb on + strand, within CCNA_00856 at 932.875 kb on + strand, within CCNA_00856 at 932.875 kb on + strand, within CCNA_00856 at 932.875 kb on + strand, within CCNA_00856 at 932.880 kb on + strand, within CCNA_00856 at 932.880 kb on + strand, within CCNA_00856 at 932.883 kb on - strand, within CCNA_00856 at 932.888 kb on - strand, within CCNA_00856 at 932.888 kb on - strand, within CCNA_00856 at 932.888 kb on - strand, within CCNA_00856 at 932.888 kb on - strand, within CCNA_00856 at 932.904 kb on + strand, within CCNA_00856 at 932.904 kb on + strand, within CCNA_00856 at 932.904 kb on + strand, within CCNA_00856 at 932.904 kb on + strand, within CCNA_00856 at 932.904 kb on + strand, within CCNA_00856 at 932.912 kb on - strand, within CCNA_00856 at 932.981 kb on + strand, within CCNA_00856 at 932.989 kb on - strand, within CCNA_00856 at 933.009 kb on - strand, within CCNA_00856 at 933.027 kb on - strand, within CCNA_00856 at 933.049 kb on + strand, within CCNA_00856 at 933.057 kb on - strand, within CCNA_00856 at 933.084 kb on + strand, within CCNA_00856 at 933.103 kb on - strand, within CCNA_00856 at 933.105 kb on + strand, within CCNA_00856 at 933.110 kb on - strand, within CCNA_00856 at 933.112 kb on + strand, within CCNA_00856 at 933.115 kb on - strand, within CCNA_00856 at 933.138 kb on - strand, within CCNA_00856 at 933.139 kb on + strand, within CCNA_00856 at 933.139 kb on + strand, within CCNA_00856 at 933.139 kb on + strand, within CCNA_00856 at 933.160 kb on + strand, within CCNA_00856 at 933.173 kb on - strand, within CCNA_00856 at 933.174 kb on - strand, within CCNA_00856 at 933.195 kb on + strand at 933.195 kb on + strand at 933.195 kb on + strand at 933.195 kb on + strand at 933.195 kb on + strand at 933.195 kb on + strand at 933.203 kb on - strand at 933.203 kb on - strand at 933.207 kb on + strand at 933.208 kb on - strand at 933.222 kb on + strand at 933.222 kb on + strand at 933.230 kb on - strand at 933.237 kb on + strand at 933.245 kb on - strand at 933.245 kb on - strand at 933.271 kb on - strand at 933.301 kb on + strand at 933.311 kb on + strand at 933.311 kb on + strand at 933.341 kb on - strand at 933.365 kb on + strand at 933.365 kb on + strand at 933.370 kb on + strand at 933.373 kb on - strand at 933.373 kb on - strand at 933.385 kb on - strand at 933.462 kb on + strand at 933.469 kb on + strand at 933.515 kb on + strand at 933.530 kb on + strand at 933.533 kb on - strand at 933.533 kb on - strand at 933.548 kb on - strand at 933.618 kb on - strand at 933.628 kb on - strand at 933.629 kb on - strand at 933.639 kb on - strand at 933.662 kb on - strand at 933.694 kb on + strand, within CCNA_00857 at 933.702 kb on - strand, within CCNA_00857 at 933.710 kb on + strand, within CCNA_00857 at 933.723 kb on - strand, within CCNA_00857 at 933.723 kb on - strand, within CCNA_00857 at 933.762 kb on - strand, within CCNA_00857 at 933.775 kb on - strand, within CCNA_00857 at 933.792 kb on - strand, within CCNA_00857 at 933.798 kb on + strand, within CCNA_00857 at 933.798 kb on + strand, within CCNA_00857 at 933.806 kb on - strand, within CCNA_00857 at 933.806 kb on - strand, within CCNA_00857 at 933.806 kb on - strand, within CCNA_00857 at 933.847 kb on + strand, within CCNA_00857 at 933.855 kb on - strand, within CCNA_00857 at 933.856 kb on - strand, within CCNA_00857 at 933.918 kb on - strand, within CCNA_00857 at 933.956 kb on - strand, within CCNA_00857 at 933.986 kb on + strand, within CCNA_00857 at 933.990 kb on + strand, within CCNA_00857 at 933.994 kb on - strand, within CCNA_00857 at 934.014 kb on + strand, within CCNA_00857 at 934.014 kb on + strand, within CCNA_00857 at 934.022 kb on - strand, within CCNA_00857 at 934.039 kb on + strand, within CCNA_00857 at 934.058 kb on + strand, within CCNA_00857 at 934.058 kb on + strand, within CCNA_00857 at 934.063 kb on + strand, within CCNA_00857 at 934.063 kb on + strand, within CCNA_00857 at 934.066 kb on - strand, within CCNA_00857 at 934.124 kb on - strand, within CCNA_00857 at 934.129 kb on - strand, within CCNA_00857 at 934.129 kb on - strand, within CCNA_00857 at 934.129 kb on - strand, within CCNA_00857 at 934.129 kb on - strand, within CCNA_00857 at 934.183 kb on + strand, within CCNA_00857 at 934.221 kb on + strand, within CCNA_00857 at 934.239 kb on - strand, within CCNA_00857 at 934.248 kb on + strand, within CCNA_00857 at 934.272 kb on + strand, within CCNA_00857 at 934.272 kb on + strand, within CCNA_00857 at 934.275 kb on - strand, within CCNA_00857 at 934.280 kb on - strand, within CCNA_00857 at 934.280 kb on - strand, within CCNA_00857 at 934.280 kb on - strand, within CCNA_00857 at 934.287 kb on + strand, within CCNA_00857 at 934.287 kb on + strand, within CCNA_00857 at 934.336 kb on - strand, within CCNA_00857 at 934.409 kb on + strand, within CCNA_00857 at 934.417 kb on - strand, within CCNA_00857 at 934.442 kb on - strand, within CCNA_00857 at 934.452 kb on - strand, within CCNA_00857 at 934.452 kb on - strand, within CCNA_00857 at 934.472 kb on - strand, within CCNA_00857 at 934.474 kb on + strand, within CCNA_00857 at 934.477 kb on - strand, within CCNA_00857 at 934.503 kb on + strand, within CCNA_00857 at 934.503 kb on + strand, within CCNA_00857 at 934.538 kb on - strand, within CCNA_00857 at 934.544 kb on + strand, within CCNA_00857 at 934.559 kb on - strand, within CCNA_00857 at 934.630 kb on - strand, within CCNA_00857 at 934.661 kb on + strand, within CCNA_00857 at 934.669 kb on - strand, within CCNA_00857 at 934.684 kb on - strand, within CCNA_00857 at 934.684 kb on - strand, within CCNA_00857 at 934.735 kb on - strand, within CCNA_00857 at 934.745 kb on + strand, within CCNA_00857 at 934.753 kb on - strand, within CCNA_00857 at 934.753 kb on - strand at 934.781 kb on - strand, within CCNA_00857 at 934.781 kb on - strand, within CCNA_00857 at 934.797 kb on - strand, within CCNA_00857 at 934.895 kb on + strand at 934.907 kb on - strand at 934.907 kb on - strand at 934.907 kb on - strand at 934.958 kb on + strand at 934.958 kb on + strand at 934.965 kb on + strand at 934.966 kb on - strand at 934.966 kb on - strand at 934.966 kb on - strand at 934.966 kb on - strand at 934.966 kb on - strand at 934.966 kb on - strand at 934.983 kb on - strand at 935.003 kb on - strand at 935.012 kb on - strand at 935.038 kb on + strand at 935.038 kb on + strand at 935.109 kb on - strand at 935.120 kb on + strand at 935.143 kb on + strand at 935.158 kb on - strand at 935.166 kb on - strand at 935.264 kb on - strand at 935.270 kb on + strand at 935.278 kb on - strand at 935.278 kb on - strand at 935.278 kb on - strand at 935.297 kb on + strand at 935.316 kb on + strand at 935.316 kb on + strand at 935.358 kb on + strand at 935.390 kb on - strand at 935.390 kb on - strand at 935.392 kb on + strand at 935.400 kb on - strand at 935.407 kb on + strand at 935.408 kb on + strand at 935.415 kb on - strand at 935.416 kb on - strand at 935.416 kb on - strand at 935.418 kb on + strand at 935.423 kb on + strand at 935.423 kb on + strand at 935.426 kb on - strand at 935.431 kb on - strand at 935.433 kb on + strand at 935.437 kb on + strand at 935.445 kb on - strand at 935.447 kb on + strand at 935.458 kb on + strand at 935.458 kb on + strand at 935.458 kb on + strand at 935.466 kb on - strand at 935.466 kb on - strand at 935.488 kb on - strand at 935.574 kb on - strand, within CCNA_00858 at 935.586 kb on + strand, within CCNA_00858 at 935.599 kb on - strand, within CCNA_00858 at 935.609 kb on - strand, within CCNA_00858 at 935.620 kb on - strand, within CCNA_00858 at 935.624 kb on - strand, within CCNA_00858 at 935.629 kb on + strand, within CCNA_00858 at 935.629 kb on + strand, within CCNA_00858 at 935.634 kb on + strand, within CCNA_00858 at 935.634 kb on + strand, within CCNA_00858 at 935.634 kb on + strand, within CCNA_00858 at 935.637 kb on - strand, within CCNA_00858 at 935.642 kb on - strand, within CCNA_00858 at 935.690 kb on + strand, within CCNA_00858 at 935.695 kb on + strand, within CCNA_00858 at 935.703 kb on - strand, within CCNA_00858 at 935.739 kb on - strand at 935.767 kb on + strand, within CCNA_00858 at 935.811 kb on + strand, within CCNA_00858 at 935.816 kb on + strand, within CCNA_00858 at 935.819 kb on - strand, within CCNA_00858 at 935.834 kb on + strand, within CCNA_00858 at 935.855 kb on + strand, within CCNA_00858 at 935.928 kb on + strand, within CCNA_00858 at 935.932 kb on - strand, within CCNA_00858 at 935.936 kb on - strand, within CCNA_00858
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep2 12 days remove 932,530 + CCNA_00856 0.49 -1.9 932,619 - CCNA_00856 0.55 +0.3 932,627 - CCNA_00856 0.55 -0.5 932,667 + CCNA_00856 0.58 -0.5 932,667 + CCNA_00856 0.58 -1.3 932,668 + CCNA_00856 0.58 +0.7 932,690 - CCNA_00856 0.59 +2.3 932,698 - CCNA_00856 0.59 -1.0 932,715 - CCNA_00856 0.61 -1.0 932,725 - CCNA_00856 0.61 -0.6 932,725 - CCNA_00856 0.61 -0.7 932,727 + CCNA_00856 0.61 -0.2 932,727 + CCNA_00856 0.61 -0.1 932,727 + CCNA_00856 0.61 -0.4 932,735 - CCNA_00856 0.62 +0.7 932,754 + CCNA_00856 0.63 +1.3 932,770 + CCNA_00856 0.64 -0.4 932,783 - CCNA_00856 0.65 -0.3 932,842 + CCNA_00856 0.68 -1.1 932,844 - CCNA_00856 0.68 -1.6 932,845 + CCNA_00856 0.69 -0.9 932,850 - CCNA_00856 0.69 -1.1 932,860 + CCNA_00856 0.69 +0.3 932,860 + CCNA_00856 0.69 -0.3 932,860 + CCNA_00856 0.69 -0.6 932,867 - CCNA_00856 0.70 -0.9 932,875 + CCNA_00856 0.70 +0.1 932,875 + CCNA_00856 0.70 -0.0 932,875 + CCNA_00856 0.70 -1.3 932,875 + CCNA_00856 0.70 +3.3 932,875 + CCNA_00856 0.70 +0.7 932,880 + CCNA_00856 0.71 -0.8 932,880 + CCNA_00856 0.71 -0.0 932,883 - CCNA_00856 0.71 +0.7 932,888 - CCNA_00856 0.71 -2.0 932,888 - CCNA_00856 0.71 +0.7 932,888 - CCNA_00856 0.71 -0.6 932,888 - CCNA_00856 0.71 -0.4 932,904 + CCNA_00856 0.72 +0.3 932,904 + CCNA_00856 0.72 +0.7 932,904 + CCNA_00856 0.72 +0.7 932,904 + CCNA_00856 0.72 +1.9 932,904 + CCNA_00856 0.72 +0.5 932,912 - CCNA_00856 0.73 -1.4 932,981 + CCNA_00856 0.77 -1.8 932,989 - CCNA_00856 0.77 -0.0 933,009 - CCNA_00856 0.79 +0.7 933,027 - CCNA_00856 0.80 +0.7 933,049 + CCNA_00856 0.81 -1.8 933,057 - CCNA_00856 0.82 -0.0 933,084 + CCNA_00856 0.83 +0.7 933,103 - CCNA_00856 0.84 +1.6 933,105 + CCNA_00856 0.85 +0.7 933,110 - CCNA_00856 0.85 -2.5 933,112 + CCNA_00856 0.85 -1.1 933,115 - CCNA_00856 0.85 +0.7 933,138 - CCNA_00856 0.87 +4.6 933,139 + CCNA_00856 0.87 +0.4 933,139 + CCNA_00856 0.87 +0.2 933,139 + CCNA_00856 0.87 -0.7 933,160 + CCNA_00856 0.88 +0.7 933,173 - CCNA_00856 0.89 -1.3 933,174 - CCNA_00856 0.89 -1.9 933,195 + -1.6 933,195 + -1.1 933,195 + +2.0 933,195 + +0.1 933,195 + -1.0 933,195 + -2.5 933,203 - +0.5 933,203 - -0.5 933,207 + -0.0 933,208 - +1.3 933,222 + -0.1 933,222 + -1.4 933,230 - +1.3 933,237 + +0.7 933,245 - +2.3 933,245 - -1.1 933,271 - -2.0 933,301 + -0.7 933,311 + -0.5 933,311 + -0.3 933,341 - -0.7 933,365 + -0.2 933,365 + +0.1 933,370 + +0.3 933,373 - +0.5 933,373 - +0.7 933,385 - -3.0 933,462 + -0.5 933,469 + -0.2 933,515 + +2.7 933,530 + -0.9 933,533 - +0.9 933,533 - +0.3 933,548 - +1.6 933,618 - +1.1 933,628 - +1.4 933,629 - +1.2 933,639 - +1.5 933,662 - +1.3 933,694 + CCNA_00857 0.12 -0.9 933,702 - CCNA_00857 0.12 +1.4 933,710 + CCNA_00857 0.13 -0.0 933,723 - CCNA_00857 0.14 +1.3 933,723 - CCNA_00857 0.14 +0.6 933,762 - CCNA_00857 0.16 +1.7 933,775 - CCNA_00857 0.17 -0.1 933,792 - CCNA_00857 0.18 +0.4 933,798 + CCNA_00857 0.19 -0.4 933,798 + CCNA_00857 0.19 -1.0 933,806 - CCNA_00857 0.19 +1.3 933,806 - CCNA_00857 0.19 +0.7 933,806 - CCNA_00857 0.19 +1.0 933,847 + CCNA_00857 0.22 +1.9 933,855 - CCNA_00857 0.23 +0.9 933,856 - CCNA_00857 0.23 +0.4 933,918 - CCNA_00857 0.27 +0.9 933,956 - CCNA_00857 0.30 +1.4 933,986 + CCNA_00857 0.32 +1.2 933,990 + CCNA_00857 0.32 -1.0 933,994 - CCNA_00857 0.32 -0.2 934,014 + CCNA_00857 0.34 -1.4 934,014 + CCNA_00857 0.34 +0.3 934,022 - CCNA_00857 0.34 +0.8 934,039 + CCNA_00857 0.36 +1.3 934,058 + CCNA_00857 0.37 -1.0 934,058 + CCNA_00857 0.37 -1.7 934,063 + CCNA_00857 0.37 -1.9 934,063 + CCNA_00857 0.37 -0.5 934,066 - CCNA_00857 0.38 +1.0 934,124 - CCNA_00857 0.42 +2.1 934,129 - CCNA_00857 0.42 +1.3 934,129 - CCNA_00857 0.42 +1.1 934,129 - CCNA_00857 0.42 +0.9 934,129 - CCNA_00857 0.42 +0.4 934,183 + CCNA_00857 0.46 +0.6 934,221 + CCNA_00857 0.48 -0.4 934,239 - CCNA_00857 0.50 +0.7 934,248 + CCNA_00857 0.50 +0.1 934,272 + CCNA_00857 0.52 +1.3 934,272 + CCNA_00857 0.52 -1.3 934,275 - CCNA_00857 0.52 +0.9 934,280 - CCNA_00857 0.52 -1.4 934,280 - CCNA_00857 0.52 +0.7 934,280 - CCNA_00857 0.52 +1.0 934,287 + CCNA_00857 0.53 -0.7 934,287 + CCNA_00857 0.53 -0.2 934,336 - CCNA_00857 0.56 +1.3 934,409 + CCNA_00857 0.61 +2.3 934,417 - CCNA_00857 0.62 +1.1 934,442 - CCNA_00857 0.64 +0.7 934,452 - CCNA_00857 0.64 +3.2 934,452 - CCNA_00857 0.64 +1.1 934,472 - CCNA_00857 0.66 +0.3 934,474 + CCNA_00857 0.66 +0.1 934,477 - CCNA_00857 0.66 +0.8 934,503 + CCNA_00857 0.68 +0.7 934,503 + CCNA_00857 0.68 +1.7 934,538 - CCNA_00857 0.70 +0.5 934,544 + CCNA_00857 0.71 +1.3 934,559 - CCNA_00857 0.72 +0.6 934,630 - CCNA_00857 0.77 +0.8 934,661 + CCNA_00857 0.79 +1.0 934,669 - CCNA_00857 0.79 -2.2 934,684 - CCNA_00857 0.81 +1.0 934,684 - CCNA_00857 0.81 +0.0 934,735 - CCNA_00857 0.84 +0.3 934,745 + CCNA_00857 0.85 -0.1 934,753 - CCNA_00857 0.85 +0.7 934,753 - +1.1 934,781 - CCNA_00857 0.87 +0.8 934,781 - CCNA_00857 0.87 +1.0 934,797 - CCNA_00857 0.88 +1.4 934,895 + -0.0 934,907 - -1.0 934,907 - +0.1 934,907 - +1.2 934,958 + +0.1 934,958 + -0.5 934,965 + -1.1 934,966 - +1.3 934,966 - -0.9 934,966 - +0.5 934,966 - +0.9 934,966 - +1.7 934,966 - +0.2 934,983 - +0.5 935,003 - -1.8 935,012 - -0.1 935,038 + +1.3 935,038 + -0.4 935,109 - -2.3 935,120 + +0.3 935,143 + -0.7 935,158 - +0.2 935,166 - -0.0 935,264 - -0.9 935,270 + -1.7 935,278 - -1.0 935,278 - -0.4 935,278 - -1.0 935,297 + -0.0 935,316 + +1.6 935,316 + +0.5 935,358 + -0.7 935,390 - -0.7 935,390 - -0.1 935,392 + +0.2 935,400 - -0.3 935,407 + +0.5 935,408 + +0.5 935,415 - +0.1 935,416 - -1.1 935,416 - -1.0 935,418 + -0.5 935,423 + +0.2 935,423 + +0.4 935,426 - +0.7 935,431 - -1.0 935,433 + +0.3 935,437 + +0.7 935,445 - -1.2 935,447 + +0.2 935,458 + -0.1 935,458 + +0.6 935,458 + -1.9 935,466 - -0.7 935,466 - -0.7 935,488 - -1.3 935,574 - CCNA_00858 0.11 -1.0 935,586 + CCNA_00858 0.12 -0.3 935,599 - CCNA_00858 0.12 +0.2 935,609 - CCNA_00858 0.13 +1.5 935,620 - CCNA_00858 0.13 -1.4 935,624 - CCNA_00858 0.13 +0.9 935,629 + CCNA_00858 0.14 +0.8 935,629 + CCNA_00858 0.14 -0.1 935,634 + CCNA_00858 0.14 -0.1 935,634 + CCNA_00858 0.14 -0.3 935,634 + CCNA_00858 0.14 -0.5 935,637 - CCNA_00858 0.14 +1.3 935,642 - CCNA_00858 0.14 -1.0 935,690 + CCNA_00858 0.16 -0.5 935,695 + CCNA_00858 0.16 -0.0 935,703 - CCNA_00858 0.17 -0.1 935,739 - +0.7 935,767 + CCNA_00858 0.20 +1.5 935,811 + CCNA_00858 0.22 -0.3 935,816 + CCNA_00858 0.22 +0.6 935,819 - CCNA_00858 0.22 -0.1 935,834 + CCNA_00858 0.23 -0.4 935,855 + CCNA_00858 0.24 +0.2 935,928 + CCNA_00858 0.27 -0.4 935,932 - CCNA_00858 0.27 -1.0 935,936 - CCNA_00858 0.27 +1.3
Or see this region's nucleotide sequence