Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00675

Experiment: PYE 0.5x 30C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00674 and CCNA_00675 overlap by 35 nucleotidesCCNA_00675 and CCNA_00676 overlap by 1 nucleotidesCCNA_00676 and CCNA_00677 are separated by 147 nucleotides CCNA_00674: CCNA_00674 - NAD(FAD)-utilizing dehydrogenase, at 731,887 to 733,134 _00674 CCNA_00675: CCNA_00675 - VapC-like PIN domain ribonuclease, at 733,100 to 733,495 _00675 CCNA_00676: CCNA_00676 - PSK-family transcription factor, at 733,495 to 733,734 _00676 CCNA_00677: CCNA_00677 - LSU ribosomal protein L1P, at 733,882 to 734,571 _00677 Position (kb) 733 734Strain fitness (log2 ratio) -2 -1 0 1 2at 732.113 kb on + strand, within CCNA_00674at 732.121 kb on - strand, within CCNA_00674at 732.121 kb on - strand, within CCNA_00674at 732.153 kb on + strand, within CCNA_00674at 732.161 kb on - strand, within CCNA_00674at 732.162 kb on - strand, within CCNA_00674at 732.240 kb on - strand, within CCNA_00674at 732.305 kb on - strand, within CCNA_00674at 732.317 kb on - strand, within CCNA_00674at 732.352 kb on - strand, within CCNA_00674at 732.355 kb on + strand, within CCNA_00674at 732.355 kb on + strand, within CCNA_00674at 732.355 kb on + strand, within CCNA_00674at 732.388 kb on + strand, within CCNA_00674at 732.440 kb on - strand, within CCNA_00674at 732.512 kb on + strand, within CCNA_00674at 732.536 kb on - strand, within CCNA_00674at 732.574 kb on + strand, within CCNA_00674at 732.580 kb on - strand, within CCNA_00674at 732.586 kb on - strand, within CCNA_00674at 732.611 kb on - strand, within CCNA_00674at 732.642 kb on + strand, within CCNA_00674at 732.656 kb on - strand, within CCNA_00674at 732.676 kb on + strand, within CCNA_00674at 732.685 kb on + strand, within CCNA_00674at 732.693 kb on - strand, within CCNA_00674at 732.693 kb on - strand, within CCNA_00674at 732.721 kb on - strand, within CCNA_00674at 732.723 kb on - strand, within CCNA_00674at 732.756 kb on - strand, within CCNA_00674at 732.799 kb on + strand, within CCNA_00674at 732.808 kb on + strand, within CCNA_00674at 732.808 kb on + strand, within CCNA_00674at 732.840 kb on - strand, within CCNA_00674at 732.841 kb on + strand, within CCNA_00674at 732.841 kb on + strand, within CCNA_00674at 732.843 kb on + strand, within CCNA_00674at 732.849 kb on - strand, within CCNA_00674at 732.921 kb on - strand, within CCNA_00674at 732.936 kb on + strand, within CCNA_00674at 732.936 kb on + strand, within CCNA_00674at 732.936 kb on + strand, within CCNA_00674at 732.944 kb on - strand, within CCNA_00674at 732.944 kb on - strand, within CCNA_00674at 732.944 kb on - strand, within CCNA_00674at 732.944 kb on - strand, within CCNA_00674at 732.987 kb on - strand, within CCNA_00674at 733.016 kb on + strandat 733.016 kb on + strandat 733.024 kb on - strandat 733.024 kb on - strandat 733.024 kb on - strandat 733.092 kb on - strandat 733.106 kb on - strandat 733.129 kb on + strandat 733.138 kb on - strandat 733.140 kb on + strand, within CCNA_00675at 733.145 kb on - strand, within CCNA_00675at 733.170 kb on + strand, within CCNA_00675at 733.197 kb on + strand, within CCNA_00675at 733.197 kb on + strand, within CCNA_00675at 733.202 kb on - strand, within CCNA_00675at 733.214 kb on + strand, within CCNA_00675at 733.222 kb on - strand, within CCNA_00675at 733.282 kb on - strand, within CCNA_00675at 733.288 kb on + strand, within CCNA_00675at 733.296 kb on + strand, within CCNA_00675at 733.296 kb on + strand, within CCNA_00675at 733.304 kb on - strand, within CCNA_00675at 733.309 kb on - strand, within CCNA_00675at 733.309 kb on - strand, within CCNA_00675at 733.309 kb on - strand, within CCNA_00675at 733.309 kb on - strand, within CCNA_00675at 733.309 kb on - strand, within CCNA_00675at 733.340 kb on - strand, within CCNA_00675at 733.366 kb on + strand, within CCNA_00675at 733.444 kb on - strand, within CCNA_00675at 733.451 kb on - strand, within CCNA_00675at 733.488 kb on + strandat 733.491 kb on - strandat 733.534 kb on + strand, within CCNA_00676at 733.542 kb on - strand, within CCNA_00676at 733.607 kb on + strand, within CCNA_00676at 733.607 kb on + strandat 733.607 kb on + strand, within CCNA_00676at 733.607 kb on + strand, within CCNA_00676at 733.607 kb on + strand, within CCNA_00676at 733.615 kb on - strand, within CCNA_00676at 733.637 kb on - strand, within CCNA_00676at 733.652 kb on - strand, within CCNA_00676at 733.757 kb on + strandat 733.787 kb on + strandat 733.792 kb on + strandat 733.825 kb on + strandat 733.828 kb on - strandat 733.855 kb on - strandat 733.863 kb on - strandat 733.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep2 12 days
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732,113 + CCNA_00674 0.18 -0.4
732,121 - CCNA_00674 0.19 +0.4
732,121 - CCNA_00674 0.19 +1.6
732,153 + CCNA_00674 0.21 +0.3
732,161 - CCNA_00674 0.22 +0.5
732,162 - CCNA_00674 0.22 +1.9
732,240 - CCNA_00674 0.28 +0.5
732,305 - CCNA_00674 0.33 +0.4
732,317 - CCNA_00674 0.34 +0.5
732,352 - CCNA_00674 0.37 +0.8
732,355 + CCNA_00674 0.38 +0.7
732,355 + CCNA_00674 0.38 -0.0
732,355 + CCNA_00674 0.38 -0.7
732,388 + CCNA_00674 0.40 -0.0
732,440 - CCNA_00674 0.44 -0.0
732,512 + CCNA_00674 0.50 +0.9
732,536 - CCNA_00674 0.52 +0.7
732,574 + CCNA_00674 0.55 -0.4
732,580 - CCNA_00674 0.56 +1.5
732,586 - CCNA_00674 0.56 +1.3
732,611 - CCNA_00674 0.58 -1.7
732,642 + CCNA_00674 0.60 +0.2
732,656 - CCNA_00674 0.62 +0.7
732,676 + CCNA_00674 0.63 +1.2
732,685 + CCNA_00674 0.64 +0.8
732,693 - CCNA_00674 0.65 +1.0
732,693 - CCNA_00674 0.65 +0.4
732,721 - CCNA_00674 0.67 +1.6
732,723 - CCNA_00674 0.67 -0.9
732,756 - CCNA_00674 0.70 -0.5
732,799 + CCNA_00674 0.73 +0.6
732,808 + CCNA_00674 0.74 -1.8
732,808 + CCNA_00674 0.74 +0.0
732,840 - CCNA_00674 0.76 +0.6
732,841 + CCNA_00674 0.76 -1.0
732,841 + CCNA_00674 0.76 -1.4
732,843 + CCNA_00674 0.77 +0.2
732,849 - CCNA_00674 0.77 +2.7
732,921 - CCNA_00674 0.83 +0.5
732,936 + CCNA_00674 0.84 -0.4
732,936 + CCNA_00674 0.84 -0.2
732,936 + CCNA_00674 0.84 -1.3
732,944 - CCNA_00674 0.85 +0.4
732,944 - CCNA_00674 0.85 +0.4
732,944 - CCNA_00674 0.85 +0.1
732,944 - CCNA_00674 0.85 +0.6
732,987 - CCNA_00674 0.88 +1.1
733,016 + -1.2
733,016 + +1.2
733,024 - -0.6
733,024 - +0.6
733,024 - +0.6
733,092 - +0.5
733,106 - +0.3
733,129 + -0.3
733,138 - +0.7
733,140 + CCNA_00675 0.10 +0.9
733,145 - CCNA_00675 0.11 +0.7
733,170 + CCNA_00675 0.18 -0.4
733,197 + CCNA_00675 0.24 -0.2
733,197 + CCNA_00675 0.24 +2.3
733,202 - CCNA_00675 0.26 +0.3
733,214 + CCNA_00675 0.29 +1.3
733,222 - CCNA_00675 0.31 +0.9
733,282 - CCNA_00675 0.46 +0.8
733,288 + CCNA_00675 0.47 +1.3
733,296 + CCNA_00675 0.49 +1.3
733,296 + CCNA_00675 0.49 +0.7
733,304 - CCNA_00675 0.52 +0.6
733,309 - CCNA_00675 0.53 +2.2
733,309 - CCNA_00675 0.53 +1.8
733,309 - CCNA_00675 0.53 +0.8
733,309 - CCNA_00675 0.53 +0.8
733,309 - CCNA_00675 0.53 +1.1
733,340 - CCNA_00675 0.61 +1.8
733,366 + CCNA_00675 0.67 +2.3
733,444 - CCNA_00675 0.87 +0.7
733,451 - CCNA_00675 0.89 +1.6
733,488 + +0.3
733,491 - -0.1
733,534 + CCNA_00676 0.16 -0.7
733,542 - CCNA_00676 0.20 +0.8
733,607 + CCNA_00676 0.47 -0.7
733,607 + +1.3
733,607 + CCNA_00676 0.47 -1.1
733,607 + CCNA_00676 0.47 -0.9
733,607 + CCNA_00676 0.47 +0.6
733,615 - CCNA_00676 0.50 +1.6
733,637 - CCNA_00676 0.59 +1.1
733,652 - CCNA_00676 0.65 +1.1
733,757 + -0.1
733,787 + +0.6
733,792 + +0.0
733,825 + -0.2
733,828 - -0.1
733,855 - +0.3
733,863 - -0.2
733,915 - +0.6

Or see this region's nucleotide sequence