Experiment: PYE 0.5x 30C survival rep2 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00346 and CCNA_00347 are separated by 89 nucleotides CCNA_00347 and CCNA_00348 are separated by 129 nucleotides
CCNA_00346: CCNA_00346 - dihydrolipoamide dehydrogenase, at 360,419 to 361,819
_00346
CCNA_00347: CCNA_00347 - hypothetical protein, at 361,909 to 362,088
_00347
CCNA_00348: CCNA_00348 - methyl-accepting chemotaxis protein, at 362,218 to 364,221
_00348
Position (kb) 361
362
363 Strain fitness (log2 ratio) -1
0
1
2 at 361.827 kb on - strand at 361.865 kb on - strand at 361.991 kb on - strand, within CCNA_00347 at 362.006 kb on + strand, within CCNA_00347 at 362.008 kb on - strand, within CCNA_00347 at 362.010 kb on - strand, within CCNA_00347 at 362.096 kb on + strand at 362.179 kb on + strand at 362.196 kb on + strand at 362.204 kb on - strand at 362.258 kb on + strand at 362.258 kb on + strand at 362.267 kb on + strand at 362.328 kb on - strand at 362.437 kb on + strand, within CCNA_00348 at 362.544 kb on - strand, within CCNA_00348 at 362.546 kb on + strand, within CCNA_00348 at 362.554 kb on - strand, within CCNA_00348 at 362.577 kb on - strand, within CCNA_00348 at 362.577 kb on - strand, within CCNA_00348 at 362.601 kb on - strand, within CCNA_00348 at 362.662 kb on + strand, within CCNA_00348 at 362.730 kb on + strand, within CCNA_00348 at 362.738 kb on + strand, within CCNA_00348 at 362.746 kb on - strand, within CCNA_00348 at 362.746 kb on - strand, within CCNA_00348 at 362.770 kb on - strand, within CCNA_00348 at 362.787 kb on - strand, within CCNA_00348 at 362.787 kb on - strand, within CCNA_00348 at 362.787 kb on - strand, within CCNA_00348 at 362.787 kb on - strand, within CCNA_00348 at 362.934 kb on - strand, within CCNA_00348 at 362.937 kb on + strand, within CCNA_00348 at 362.967 kb on - strand, within CCNA_00348 at 363.009 kb on + strand, within CCNA_00348 at 363.009 kb on + strand, within CCNA_00348 at 363.017 kb on - strand, within CCNA_00348 at 363.017 kb on - strand, within CCNA_00348 at 363.017 kb on - strand, within CCNA_00348 at 363.066 kb on - strand, within CCNA_00348
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep2 12 days remove 361,827 - +1.2 361,865 - +0.0 361,991 - CCNA_00347 0.46 +1.3 362,006 + CCNA_00347 0.54 +0.8 362,008 - CCNA_00347 0.55 +0.3 362,010 - CCNA_00347 0.56 +0.8 362,096 + +0.3 362,179 + +0.3 362,196 + -0.1 362,204 - +1.2 362,258 + -0.5 362,258 + +1.0 362,267 + +0.4 362,328 - +1.0 362,437 + CCNA_00348 0.11 +0.9 362,544 - CCNA_00348 0.16 +0.7 362,546 + CCNA_00348 0.16 +0.5 362,554 - CCNA_00348 0.17 +0.6 362,577 - CCNA_00348 0.18 -0.2 362,577 - CCNA_00348 0.18 +0.6 362,601 - CCNA_00348 0.19 +0.6 362,662 + CCNA_00348 0.22 -0.2 362,730 + CCNA_00348 0.26 -1.6 362,738 + CCNA_00348 0.26 -0.8 362,746 - CCNA_00348 0.26 +1.9 362,746 - CCNA_00348 0.26 +0.8 362,770 - CCNA_00348 0.28 -0.1 362,787 - CCNA_00348 0.28 -0.0 362,787 - CCNA_00348 0.28 +0.2 362,787 - CCNA_00348 0.28 +0.4 362,787 - CCNA_00348 0.28 +0.6 362,934 - CCNA_00348 0.36 +0.6 362,937 + CCNA_00348 0.36 -0.9 362,967 - CCNA_00348 0.37 +0.6 363,009 + CCNA_00348 0.39 -0.1 363,009 + CCNA_00348 0.39 -0.2 363,017 - CCNA_00348 0.40 +1.3 363,017 - CCNA_00348 0.40 +0.3 363,017 - CCNA_00348 0.40 +0.0 363,066 - CCNA_00348 0.42 +0.4
Or see this region's nucleotide sequence