Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00237

Experiment: PYE 0.5x 30C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00236 and CCNA_00237 are separated by 216 nucleotidesCCNA_00237 and CCNA_00238 overlap by 26 nucleotides CCNA_00236: CCNA_00236 - hypothetical protein, at 250,611 to 252,308 _00236 CCNA_00237: CCNA_00237 - two-component response regulator chvI, at 252,525 to 253,232 _00237 CCNA_00238: CCNA_00238 - two-component sensor histidine kinase chvG, at 253,207 to 254,811 _00238 Position (kb) 252 253 254Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 251.534 kb on - strand, within CCNA_00236at 251.565 kb on - strand, within CCNA_00236at 251.580 kb on - strand, within CCNA_00236at 251.615 kb on + strand, within CCNA_00236at 251.649 kb on - strand, within CCNA_00236at 251.767 kb on + strand, within CCNA_00236at 251.779 kb on + strand, within CCNA_00236at 251.794 kb on + strand, within CCNA_00236at 251.811 kb on - strand, within CCNA_00236at 251.813 kb on + strand, within CCNA_00236at 251.815 kb on + strand, within CCNA_00236at 251.823 kb on - strand, within CCNA_00236at 251.839 kb on + strand, within CCNA_00236at 251.870 kb on - strand, within CCNA_00236at 251.870 kb on - strand, within CCNA_00236at 251.871 kb on - strand, within CCNA_00236at 251.880 kb on + strand, within CCNA_00236at 251.888 kb on - strand, within CCNA_00236at 251.888 kb on - strand, within CCNA_00236at 251.892 kb on + strand, within CCNA_00236at 251.900 kb on + strand, within CCNA_00236at 251.915 kb on + strand, within CCNA_00236at 251.933 kb on + strand, within CCNA_00236at 251.941 kb on - strand, within CCNA_00236at 251.941 kb on - strand, within CCNA_00236at 251.941 kb on - strand, within CCNA_00236at 251.943 kb on + strand, within CCNA_00236at 251.951 kb on - strand, within CCNA_00236at 251.968 kb on - strand, within CCNA_00236at 251.973 kb on - strand, within CCNA_00236at 252.023 kb on - strand, within CCNA_00236at 252.025 kb on + strand, within CCNA_00236at 252.025 kb on + strand, within CCNA_00236at 252.025 kb on + strand, within CCNA_00236at 252.033 kb on - strand, within CCNA_00236at 252.033 kb on - strand, within CCNA_00236at 252.033 kb on - strand, within CCNA_00236at 252.033 kb on - strand, within CCNA_00236at 252.041 kb on + strand, within CCNA_00236at 252.046 kb on + strand, within CCNA_00236at 252.054 kb on - strand, within CCNA_00236at 252.064 kb on - strand, within CCNA_00236at 252.104 kb on - strand, within CCNA_00236at 252.122 kb on - strand, within CCNA_00236at 252.147 kb on - strandat 252.167 kb on + strandat 252.167 kb on + strandat 252.175 kb on - strandat 252.175 kb on - strandat 252.186 kb on + strandat 252.186 kb on + strandat 252.186 kb on + strandat 252.186 kb on + strandat 252.186 kb on + strandat 252.186 kb on + strandat 252.193 kb on + strandat 252.194 kb on - strandat 252.194 kb on - strandat 252.194 kb on - strandat 252.194 kb on - strandat 252.201 kb on + strandat 252.216 kb on - strandat 252.239 kb on - strandat 252.276 kb on - strandat 252.310 kb on - strandat 252.311 kb on - strandat 252.311 kb on - strandat 252.317 kb on - strandat 252.317 kb on - strandat 252.317 kb on - strandat 252.339 kb on + strandat 252.348 kb on + strandat 252.356 kb on - strandat 252.370 kb on + strandat 252.412 kb on - strandat 252.424 kb on + strandat 252.440 kb on + strandat 252.440 kb on + strandat 252.476 kb on + strandat 252.489 kb on + strandat 252.502 kb on + strandat 252.503 kb on - strandat 252.511 kb on - strandat 252.515 kb on + strandat 252.592 kb on + strandat 252.600 kb on - strand, within CCNA_00237at 252.611 kb on + strand, within CCNA_00237at 252.642 kb on - strand, within CCNA_00237at 252.647 kb on + strand, within CCNA_00237at 252.653 kb on - strandat 252.657 kb on + strand, within CCNA_00237at 252.703 kb on + strand, within CCNA_00237at 252.703 kb on + strand, within CCNA_00237at 252.711 kb on + strand, within CCNA_00237at 252.711 kb on - strand, within CCNA_00237at 252.711 kb on - strand, within CCNA_00237at 252.711 kb on - strand, within CCNA_00237at 252.733 kb on + strand, within CCNA_00237at 252.735 kb on + strand, within CCNA_00237at 252.753 kb on + strand, within CCNA_00237at 252.756 kb on - strand, within CCNA_00237at 252.760 kb on + strand, within CCNA_00237at 252.784 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.886 kb on + strand, within CCNA_00237at 252.901 kb on - strand, within CCNA_00237at 252.904 kb on - strand, within CCNA_00237at 252.933 kb on - strand, within CCNA_00237at 252.933 kb on - strand, within CCNA_00237at 252.933 kb on - strand, within CCNA_00237at 252.933 kb on - strand, within CCNA_00237at 252.950 kb on + strand, within CCNA_00237at 252.950 kb on + strand, within CCNA_00237at 252.950 kb on + strand, within CCNA_00237at 252.958 kb on - strand, within CCNA_00237at 252.969 kb on - strand, within CCNA_00237at 252.989 kb on + strand, within CCNA_00237at 253.034 kb on + strand, within CCNA_00237at 253.036 kb on + strand, within CCNA_00237at 253.048 kb on - strand, within CCNA_00237at 253.076 kb on + strand, within CCNA_00237at 253.103 kb on + strand, within CCNA_00237at 253.103 kb on + strand, within CCNA_00237at 253.103 kb on + strand, within CCNA_00237at 253.103 kb on + strand, within CCNA_00237at 253.106 kb on - strand, within CCNA_00237at 253.111 kb on - strand, within CCNA_00237at 253.116 kb on - strand, within CCNA_00237at 253.136 kb on + strand, within CCNA_00237at 253.136 kb on + strand, within CCNA_00237at 253.144 kb on - strand, within CCNA_00237at 253.144 kb on - strand, within CCNA_00237at 253.194 kb on + strandat 253.204 kb on + strandat 253.221 kb on + strandat 253.247 kb on + strandat 253.282 kb on + strandat 253.290 kb on - strandat 253.293 kb on + strandat 253.303 kb on + strandat 253.303 kb on + strandat 253.306 kb on - strandat 253.311 kb on - strandat 253.343 kb on + strandat 253.394 kb on - strand, within CCNA_00238at 253.395 kb on + strand, within CCNA_00238at 253.476 kb on + strand, within CCNA_00238at 253.503 kb on + strand, within CCNA_00238at 253.518 kb on + strand, within CCNA_00238at 253.533 kb on + strand, within CCNA_00238at 253.533 kb on + strand, within CCNA_00238at 253.539 kb on - strand, within CCNA_00238at 253.556 kb on - strand, within CCNA_00238at 253.563 kb on - strand, within CCNA_00238at 253.568 kb on + strand, within CCNA_00238at 253.600 kb on + strand, within CCNA_00238at 253.655 kb on - strand, within CCNA_00238at 253.655 kb on - strand, within CCNA_00238at 253.671 kb on + strand, within CCNA_00238at 253.671 kb on + strand, within CCNA_00238at 253.671 kb on + strand, within CCNA_00238at 253.671 kb on + strand, within CCNA_00238at 253.679 kb on - strand, within CCNA_00238at 253.713 kb on + strand, within CCNA_00238at 253.721 kb on - strand, within CCNA_00238at 253.721 kb on - strand, within CCNA_00238at 253.722 kb on + strandat 253.732 kb on - strand, within CCNA_00238at 253.779 kb on + strand, within CCNA_00238at 253.815 kb on - strand, within CCNA_00238at 253.848 kb on + strand, within CCNA_00238at 253.863 kb on + strand, within CCNA_00238at 253.871 kb on - strand, within CCNA_00238at 253.871 kb on - strand, within CCNA_00238at 253.924 kb on + strand, within CCNA_00238at 253.929 kb on + strand, within CCNA_00238at 253.929 kb on + strand, within CCNA_00238at 253.935 kb on + strand, within CCNA_00238at 253.985 kb on - strand, within CCNA_00238at 254.011 kb on + strand, within CCNA_00238at 254.067 kb on + strand, within CCNA_00238at 254.175 kb on - strand, within CCNA_00238at 254.177 kb on + strand, within CCNA_00238at 254.185 kb on - strand, within CCNA_00238at 254.207 kb on + strand, within CCNA_00238

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep2 12 days
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251,534 - CCNA_00236 0.54 -1.0
251,565 - CCNA_00236 0.56 -0.1
251,580 - CCNA_00236 0.57 -0.0
251,615 + CCNA_00236 0.59 -1.3
251,649 - CCNA_00236 0.61 +0.7
251,767 + CCNA_00236 0.68 -0.3
251,779 + CCNA_00236 0.69 +0.5
251,794 + CCNA_00236 0.70 -1.7
251,811 - CCNA_00236 0.71 -0.1
251,813 + CCNA_00236 0.71 -0.6
251,815 + CCNA_00236 0.71 -1.4
251,823 - CCNA_00236 0.71 -0.1
251,839 + CCNA_00236 0.72 -1.7
251,870 - CCNA_00236 0.74 -0.4
251,870 - CCNA_00236 0.74 +1.2
251,871 - CCNA_00236 0.74 +0.4
251,880 + CCNA_00236 0.75 -1.1
251,888 - CCNA_00236 0.75 -0.0
251,888 - CCNA_00236 0.75 +0.8
251,892 + CCNA_00236 0.75 -0.8
251,900 + CCNA_00236 0.76 -1.4
251,915 + CCNA_00236 0.77 -1.5
251,933 + CCNA_00236 0.78 -0.6
251,941 - CCNA_00236 0.78 +0.2
251,941 - CCNA_00236 0.78 +0.7
251,941 - CCNA_00236 0.78 -1.0
251,943 + CCNA_00236 0.78 -1.9
251,951 - CCNA_00236 0.79 -0.4
251,968 - CCNA_00236 0.80 +0.2
251,973 - CCNA_00236 0.80 +0.7
252,023 - CCNA_00236 0.83 +0.9
252,025 + CCNA_00236 0.83 +2.0
252,025 + CCNA_00236 0.83 +0.3
252,025 + CCNA_00236 0.83 -1.6
252,033 - CCNA_00236 0.84 +0.2
252,033 - CCNA_00236 0.84 +1.9
252,033 - CCNA_00236 0.84 -3.4
252,033 - CCNA_00236 0.84 +0.2
252,041 + CCNA_00236 0.84 -0.3
252,046 + CCNA_00236 0.85 +0.4
252,054 - CCNA_00236 0.85 -0.1
252,064 - CCNA_00236 0.86 -0.4
252,104 - CCNA_00236 0.88 -0.9
252,122 - CCNA_00236 0.89 -1.0
252,147 - +1.1
252,167 + -0.3
252,167 + -1.6
252,175 - -0.7
252,175 - +1.4
252,186 + -2.0
252,186 + -2.2
252,186 + -2.1
252,186 + -3.0
252,186 + -0.3
252,186 + -0.8
252,193 + -0.8
252,194 - -0.1
252,194 - -0.4
252,194 - -0.6
252,194 - +0.2
252,201 + -1.0
252,216 - +0.6
252,239 - +2.0
252,276 - +0.5
252,310 - -0.0
252,311 - +0.7
252,311 - -2.6
252,317 - +0.6
252,317 - -0.2
252,317 - +1.4
252,339 + -1.8
252,348 + +0.6
252,356 - -0.3
252,370 + -1.0
252,412 - +0.0
252,424 + -0.6
252,440 + -1.6
252,440 + -1.4
252,476 + -2.8
252,489 + +0.3
252,502 + +0.5
252,503 - -0.1
252,511 - -0.3
252,515 + -0.1
252,592 + +2.4
252,600 - CCNA_00237 0.11 +1.6
252,611 + CCNA_00237 0.12 +1.2
252,642 - CCNA_00237 0.17 +1.9
252,647 + CCNA_00237 0.17 +3.1
252,653 - +3.6
252,657 + CCNA_00237 0.19 +2.1
252,703 + CCNA_00237 0.25 +1.9
252,703 + CCNA_00237 0.25 +1.7
252,711 + CCNA_00237 0.26 +1.3
252,711 - CCNA_00237 0.26 -0.8
252,711 - CCNA_00237 0.26 +2.2
252,711 - CCNA_00237 0.26 +1.0
252,733 + CCNA_00237 0.29 +2.0
252,735 + CCNA_00237 0.30 +1.4
252,753 + CCNA_00237 0.32 +1.4
252,756 - CCNA_00237 0.33 -0.3
252,760 + CCNA_00237 0.33 +1.6
252,784 + CCNA_00237 0.37 +2.5
252,857 + CCNA_00237 0.47 +1.4
252,857 + CCNA_00237 0.47 +1.9
252,857 + CCNA_00237 0.47 +1.6
252,857 + CCNA_00237 0.47 +1.7
252,857 + CCNA_00237 0.47 +2.0
252,857 + CCNA_00237 0.47 +1.3
252,857 + CCNA_00237 0.47 +2.2
252,857 + CCNA_00237 0.47 +2.0
252,857 + CCNA_00237 0.47 +0.2
252,857 + CCNA_00237 0.47 +1.9
252,857 + CCNA_00237 0.47 +2.3
252,857 + CCNA_00237 0.47 +1.5
252,865 - CCNA_00237 0.48 +0.4
252,865 - CCNA_00237 0.48 +0.4
252,865 - CCNA_00237 0.48 +0.4
252,865 - CCNA_00237 0.48 -0.6
252,865 - CCNA_00237 0.48 -0.4
252,865 - CCNA_00237 0.48 -0.8
252,865 - CCNA_00237 0.48 -0.3
252,865 - CCNA_00237 0.48 -0.6
252,865 - CCNA_00237 0.48 +0.0
252,865 - CCNA_00237 0.48 -0.3
252,865 - CCNA_00237 0.48 +0.6
252,865 - CCNA_00237 0.48 -1.1
252,865 - CCNA_00237 0.48 +0.0
252,886 + CCNA_00237 0.51 +2.8
252,901 - CCNA_00237 0.53 -2.0
252,904 - CCNA_00237 0.54 -1.1
252,933 - CCNA_00237 0.58 +0.4
252,933 - CCNA_00237 0.58 +1.8
252,933 - CCNA_00237 0.58 +2.7
252,933 - CCNA_00237 0.58 +0.8
252,950 + CCNA_00237 0.60 +1.7
252,950 + CCNA_00237 0.60 +1.8
252,950 + CCNA_00237 0.60 +1.3
252,958 - CCNA_00237 0.61 +0.3
252,969 - CCNA_00237 0.63 +1.9
252,989 + CCNA_00237 0.66 +1.2
253,034 + CCNA_00237 0.72 +1.7
253,036 + CCNA_00237 0.72 +1.6
253,048 - CCNA_00237 0.74 +0.6
253,076 + CCNA_00237 0.78 +1.7
253,103 + CCNA_00237 0.82 +1.3
253,103 + CCNA_00237 0.82 +2.0
253,103 + CCNA_00237 0.82 +0.9
253,103 + CCNA_00237 0.82 +1.3
253,106 - CCNA_00237 0.82 +0.6
253,111 - CCNA_00237 0.83 +1.5
253,116 - CCNA_00237 0.83 +1.6
253,136 + CCNA_00237 0.86 +1.3
253,136 + CCNA_00237 0.86 +1.4
253,144 - CCNA_00237 0.87 +1.5
253,144 - CCNA_00237 0.87 +1.3
253,194 + +1.2
253,204 + +1.5
253,221 + +1.7
253,247 + +0.3
253,282 + +0.9
253,290 - +1.6
253,293 + -3.0
253,303 + +2.4
253,303 + -2.1
253,306 - +1.6
253,311 - -0.8
253,343 + +0.0
253,394 - CCNA_00238 0.12 -1.1
253,395 + CCNA_00238 0.12 +1.0
253,476 + CCNA_00238 0.17 +1.8
253,503 + CCNA_00238 0.18 +1.0
253,518 + CCNA_00238 0.19 -1.6
253,533 + CCNA_00238 0.20 +1.1
253,533 + CCNA_00238 0.20 +0.2
253,539 - CCNA_00238 0.21 +0.2
253,556 - CCNA_00238 0.22 -0.3
253,563 - CCNA_00238 0.22 +2.0
253,568 + CCNA_00238 0.22 +1.0
253,600 + CCNA_00238 0.24 +1.4
253,655 - CCNA_00238 0.28 -1.5
253,655 - CCNA_00238 0.28 +1.0
253,671 + CCNA_00238 0.29 -0.3
253,671 + CCNA_00238 0.29 -0.2
253,671 + CCNA_00238 0.29 +1.1
253,671 + CCNA_00238 0.29 +0.9
253,679 - CCNA_00238 0.29 +1.4
253,713 + CCNA_00238 0.32 -0.2
253,721 - CCNA_00238 0.32 +0.4
253,721 - CCNA_00238 0.32 -0.0
253,722 + +0.6
253,732 - CCNA_00238 0.33 -1.3
253,779 + CCNA_00238 0.36 +0.3
253,815 - CCNA_00238 0.38 -0.3
253,848 + CCNA_00238 0.40 -1.1
253,863 + CCNA_00238 0.41 +1.0
253,871 - CCNA_00238 0.41 -0.3
253,871 - CCNA_00238 0.41 +1.0
253,924 + CCNA_00238 0.45 +1.8
253,929 + CCNA_00238 0.45 +1.6
253,929 + CCNA_00238 0.45 +0.7
253,935 + CCNA_00238 0.45 +0.4
253,985 - CCNA_00238 0.48 +1.4
254,011 + CCNA_00238 0.50 +0.8
254,067 + CCNA_00238 0.54 +1.1
254,175 - CCNA_00238 0.60 -0.8
254,177 + CCNA_00238 0.60 +0.9
254,185 - CCNA_00238 0.61 +0.4
254,207 + CCNA_00238 0.62 +0.6

Or see this region's nucleotide sequence