Experiment: PYE 0.5x 30C survival rep2 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00128 and CCNA_00129 are separated by 82 nucleotides CCNA_00129 and CCNA_00130 are separated by 3 nucleotides CCNA_00130 and CCNA_00131 are separated by 200 nucleotides CCNA_00131 and CCNA_00132 are separated by 91 nucleotides
CCNA_00128: CCNA_00128 - argininosuccinate synthase, at 137,246 to 138,472
_00128
CCNA_00129: CCNA_00129 - hypothetical protein, at 138,555 to 138,917
_00129
CCNA_00130: CCNA_00130 - Kup system potassium uptake protein, at 138,921 to 140,918
_00130
CCNA_00131: CCNA_00131 - Rrf2 family protein, at 141,119 to 141,541
_00131
CCNA_00132: CCNA_00132 - ketoacyl reductase hetN, at 141,633 to 142,433
_00132
Position (kb) 138
139
140
141 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 138.542 kb on - strand at 138.578 kb on - strand at 138.589 kb on + strand at 138.592 kb on + strand, within CCNA_00129 at 138.609 kb on - strand, within CCNA_00129 at 138.626 kb on - strand, within CCNA_00129 at 138.636 kb on - strand, within CCNA_00129 at 138.659 kb on - strand, within CCNA_00129 at 138.701 kb on + strand, within CCNA_00129 at 138.709 kb on - strand, within CCNA_00129 at 138.747 kb on - strand, within CCNA_00129 at 138.765 kb on - strand, within CCNA_00129 at 138.821 kb on - strand, within CCNA_00129 at 138.872 kb on - strand, within CCNA_00129 at 138.895 kb on + strand at 141.004 kb on + strand at 141.048 kb on + strand at 141.157 kb on - strand at 141.192 kb on - strand, within CCNA_00131 at 141.210 kb on + strand, within CCNA_00131 at 141.210 kb on + strand, within CCNA_00131 at 141.259 kb on + strand, within CCNA_00131 at 141.259 kb on + strand, within CCNA_00131 at 141.264 kb on + strand, within CCNA_00131 at 141.264 kb on + strand, within CCNA_00131 at 141.264 kb on + strand, within CCNA_00131 at 141.267 kb on - strand, within CCNA_00131 at 141.272 kb on - strand, within CCNA_00131 at 141.274 kb on + strand, within CCNA_00131 at 141.274 kb on + strand, within CCNA_00131 at 141.279 kb on + strand, within CCNA_00131 at 141.292 kb on - strand, within CCNA_00131 at 141.292 kb on - strand, within CCNA_00131 at 141.318 kb on + strand, within CCNA_00131 at 141.328 kb on + strand, within CCNA_00131 at 141.328 kb on + strand, within CCNA_00131 at 141.328 kb on + strand, within CCNA_00131 at 141.345 kb on + strand, within CCNA_00131 at 141.370 kb on - strand, within CCNA_00131 at 141.370 kb on - strand, within CCNA_00131 at 141.372 kb on - strand, within CCNA_00131 at 141.381 kb on + strand, within CCNA_00131 at 141.401 kb on + strand, within CCNA_00131 at 141.409 kb on + strand, within CCNA_00131 at 141.466 kb on + strand, within CCNA_00131 at 141.474 kb on - strand, within CCNA_00131 at 141.505 kb on + strand at 141.531 kb on + strand at 141.531 kb on + strand at 141.531 kb on + strand at 141.531 kb on + strand at 141.531 kb on + strand at 141.539 kb on - strand at 141.539 kb on - strand at 141.539 kb on - strand at 141.553 kb on + strand at 141.570 kb on + strand at 141.577 kb on + strand at 141.643 kb on + strand at 141.659 kb on - strand at 141.661 kb on - strand at 141.695 kb on + strand at 141.700 kb on + strand at 141.710 kb on + strand at 141.722 kb on + strand, within CCNA_00132 at 141.722 kb on + strand, within CCNA_00132 at 141.769 kb on + strand, within CCNA_00132 at 141.794 kb on + strand, within CCNA_00132 at 141.808 kb on + strand, within CCNA_00132 at 141.816 kb on - strand, within CCNA_00132 at 141.851 kb on - strand, within CCNA_00132 at 141.875 kb on + strand, within CCNA_00132 at 141.890 kb on - strand, within CCNA_00132 at 141.895 kb on - strand, within CCNA_00132 at 141.909 kb on - strand, within CCNA_00132 at 141.911 kb on + strand, within CCNA_00132 at 141.911 kb on + strand, within CCNA_00132 at 141.911 kb on + strand, within CCNA_00132 at 141.912 kb on + strand, within CCNA_00132
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep2 12 days remove 138,542 - +1.1 138,578 - +1.1 138,589 + +0.1 138,592 + CCNA_00129 0.10 +0.8 138,609 - CCNA_00129 0.15 -0.6 138,626 - CCNA_00129 0.20 +0.8 138,636 - CCNA_00129 0.22 +0.1 138,659 - CCNA_00129 0.29 +0.2 138,701 + CCNA_00129 0.40 +0.6 138,709 - CCNA_00129 0.42 +0.5 138,747 - CCNA_00129 0.53 +0.2 138,765 - CCNA_00129 0.58 -0.1 138,821 - CCNA_00129 0.73 -0.0 138,872 - CCNA_00129 0.87 +0.7 138,895 + +0.6 141,004 + -1.2 141,048 + -0.4 141,157 - +1.0 141,192 - CCNA_00131 0.17 +2.0 141,210 + CCNA_00131 0.22 -2.5 141,210 + CCNA_00131 0.22 -1.3 141,259 + CCNA_00131 0.33 -1.2 141,259 + CCNA_00131 0.33 -1.9 141,264 + CCNA_00131 0.34 +2.0 141,264 + CCNA_00131 0.34 -1.7 141,264 + CCNA_00131 0.34 -3.7 141,267 - CCNA_00131 0.35 +2.0 141,272 - CCNA_00131 0.36 -0.8 141,274 + CCNA_00131 0.37 -2.2 141,274 + CCNA_00131 0.37 -1.1 141,279 + CCNA_00131 0.38 -4.5 141,292 - CCNA_00131 0.41 +0.4 141,292 - CCNA_00131 0.41 -0.3 141,318 + CCNA_00131 0.47 +1.0 141,328 + CCNA_00131 0.49 -2.2 141,328 + CCNA_00131 0.49 -1.4 141,328 + CCNA_00131 0.49 -2.2 141,345 + CCNA_00131 0.53 -2.9 141,370 - CCNA_00131 0.59 +0.0 141,370 - CCNA_00131 0.59 -2.2 141,372 - CCNA_00131 0.60 -2.1 141,381 + CCNA_00131 0.62 -2.5 141,401 + CCNA_00131 0.67 -2.4 141,409 + CCNA_00131 0.69 -3.3 141,466 + CCNA_00131 0.82 -2.7 141,474 - CCNA_00131 0.84 -0.6 141,505 + -0.8 141,531 + +0.5 141,531 + +0.8 141,531 + -0.3 141,531 + -0.3 141,531 + +0.3 141,539 - +1.0 141,539 - -1.6 141,539 - +2.3 141,553 + +0.2 141,570 + +0.6 141,577 + -0.6 141,643 + -0.0 141,659 - +1.4 141,661 - -1.0 141,695 + -1.2 141,700 + +0.2 141,710 + +0.6 141,722 + CCNA_00132 0.11 -0.8 141,722 + CCNA_00132 0.11 +0.2 141,769 + CCNA_00132 0.17 +0.0 141,794 + CCNA_00132 0.20 +0.7 141,808 + CCNA_00132 0.22 +0.3 141,816 - CCNA_00132 0.23 +1.4 141,851 - CCNA_00132 0.27 -0.8 141,875 + CCNA_00132 0.30 -0.8 141,890 - CCNA_00132 0.32 -0.8 141,895 - CCNA_00132 0.33 -2.4 141,909 - CCNA_00132 0.34 -1.9 141,911 + CCNA_00132 0.35 +0.3 141,911 + CCNA_00132 0.35 -1.4 141,911 + CCNA_00132 0.35 -0.9 141,912 + CCNA_00132 0.35 -0.7
Or see this region's nucleotide sequence