Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24175

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24170 and BWI76_RS24175 are separated by 67 nucleotidesBWI76_RS24175 and BWI76_RS24180 are separated by 70 nucleotidesBWI76_RS24180 and BWI76_RS24185 are separated by 168 nucleotides BWI76_RS24170: BWI76_RS24170 - nucleoside permease, at 5,038,628 to 5,039,884 _RS24170 BWI76_RS24175: BWI76_RS24175 - ornithine decarboxylase, at 5,039,952 to 5,042,090 _RS24175 BWI76_RS24180: BWI76_RS24180 - hypothetical protein, at 5,042,161 to 5,042,359 _RS24180 BWI76_RS24185: BWI76_RS24185 - membrane protein, at 5,042,528 to 5,043,244 _RS24185 Position (kb) 5039 5040 5041 5042 5043Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5038.963 kb on + strand, within BWI76_RS24170at 5038.971 kb on - strand, within BWI76_RS24170at 5039.060 kb on - strand, within BWI76_RS24170at 5039.110 kb on + strand, within BWI76_RS24170at 5039.133 kb on + strand, within BWI76_RS24170at 5039.139 kb on - strand, within BWI76_RS24170at 5039.141 kb on - strand, within BWI76_RS24170at 5039.141 kb on - strand, within BWI76_RS24170at 5039.154 kb on + strand, within BWI76_RS24170at 5039.162 kb on - strand, within BWI76_RS24170at 5039.162 kb on - strand, within BWI76_RS24170at 5039.490 kb on - strand, within BWI76_RS24170at 5039.566 kb on + strand, within BWI76_RS24170at 5039.576 kb on + strandat 5039.830 kb on + strandat 5039.838 kb on - strandat 5039.865 kb on - strandat 5039.970 kb on + strandat 5039.970 kb on + strandat 5039.981 kb on + strandat 5040.016 kb on + strandat 5040.301 kb on - strand, within BWI76_RS24175at 5040.313 kb on - strand, within BWI76_RS24175at 5040.675 kb on - strand, within BWI76_RS24175at 5040.676 kb on - strand, within BWI76_RS24175at 5040.703 kb on - strand, within BWI76_RS24175at 5040.857 kb on + strand, within BWI76_RS24175at 5041.172 kb on + strand, within BWI76_RS24175at 5041.187 kb on - strand, within BWI76_RS24175at 5041.208 kb on + strand, within BWI76_RS24175at 5041.216 kb on + strand, within BWI76_RS24175at 5041.398 kb on - strand, within BWI76_RS24175at 5041.411 kb on + strand, within BWI76_RS24175at 5041.580 kb on - strand, within BWI76_RS24175at 5041.638 kb on - strand, within BWI76_RS24175at 5041.690 kb on + strand, within BWI76_RS24175at 5041.839 kb on + strand, within BWI76_RS24175at 5041.920 kb on + strandat 5042.011 kb on - strandat 5042.013 kb on + strandat 5042.013 kb on + strandat 5042.013 kb on + strandat 5042.021 kb on - strandat 5042.021 kb on - strandat 5042.036 kb on + strandat 5042.057 kb on - strandat 5042.138 kb on + strandat 5042.141 kb on + strandat 5042.160 kb on + strandat 5042.249 kb on + strand, within BWI76_RS24180at 5042.257 kb on - strand, within BWI76_RS24180at 5042.372 kb on + strandat 5042.407 kb on + strandat 5042.407 kb on + strandat 5042.528 kb on + strandat 5042.692 kb on + strand, within BWI76_RS24185at 5042.722 kb on - strand, within BWI76_RS24185at 5042.773 kb on + strand, within BWI76_RS24185at 5042.781 kb on - strand, within BWI76_RS24185at 5042.843 kb on + strand, within BWI76_RS24185at 5042.999 kb on - strand, within BWI76_RS24185

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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5,038,963 + BWI76_RS24170 0.27 +0.0
5,038,971 - BWI76_RS24170 0.27 -1.0
5,039,060 - BWI76_RS24170 0.34 +0.3
5,039,110 + BWI76_RS24170 0.38 -0.0
5,039,133 + BWI76_RS24170 0.40 -0.4
5,039,139 - BWI76_RS24170 0.41 -1.4
5,039,141 - BWI76_RS24170 0.41 +0.3
5,039,141 - BWI76_RS24170 0.41 +1.6
5,039,154 + BWI76_RS24170 0.42 +1.6
5,039,162 - BWI76_RS24170 0.42 -1.4
5,039,162 - BWI76_RS24170 0.42 -0.1
5,039,490 - BWI76_RS24170 0.69 -1.7
5,039,566 + BWI76_RS24170 0.75 +0.5
5,039,576 + +2.1
5,039,830 + -0.2
5,039,838 - -1.8
5,039,865 - +1.1
5,039,970 + +0.8
5,039,970 + -0.9
5,039,981 + +0.2
5,040,016 + -0.1
5,040,301 - BWI76_RS24175 0.16 -0.2
5,040,313 - BWI76_RS24175 0.17 -1.1
5,040,675 - BWI76_RS24175 0.34 +0.8
5,040,676 - BWI76_RS24175 0.34 +0.1
5,040,703 - BWI76_RS24175 0.35 +0.0
5,040,857 + BWI76_RS24175 0.42 -4.4
5,041,172 + BWI76_RS24175 0.57 +0.1
5,041,187 - BWI76_RS24175 0.58 -2.0
5,041,208 + BWI76_RS24175 0.59 +0.1
5,041,216 + BWI76_RS24175 0.59 +0.2
5,041,398 - BWI76_RS24175 0.68 +0.1
5,041,411 + BWI76_RS24175 0.68 +2.2
5,041,580 - BWI76_RS24175 0.76 +0.4
5,041,638 - BWI76_RS24175 0.79 -0.2
5,041,690 + BWI76_RS24175 0.81 +0.4
5,041,839 + BWI76_RS24175 0.88 +0.6
5,041,920 + +0.1
5,042,011 - +0.1
5,042,013 + -0.1
5,042,013 + +0.1
5,042,013 + -2.8
5,042,021 - +1.3
5,042,021 - +2.1
5,042,036 + -0.1
5,042,057 - -0.2
5,042,138 + +1.1
5,042,141 + +0.2
5,042,160 + +0.2
5,042,249 + BWI76_RS24180 0.44 +1.8
5,042,257 - BWI76_RS24180 0.48 +0.8
5,042,372 + +0.5
5,042,407 + -1.3
5,042,407 + +0.6
5,042,528 + -0.4
5,042,692 + BWI76_RS24185 0.23 -2.0
5,042,722 - BWI76_RS24185 0.27 +0.7
5,042,773 + BWI76_RS24185 0.34 +0.1
5,042,781 - BWI76_RS24185 0.35 -0.3
5,042,843 + BWI76_RS24185 0.44 +0.3
5,042,999 - BWI76_RS24185 0.66 -2.2

Or see this region's nucleotide sequence