Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21795

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21785 and BWI76_RS21790 are separated by 352 nucleotidesBWI76_RS21790 and BWI76_RS21795 are separated by 5 nucleotidesBWI76_RS21795 and BWI76_RS21800 are separated by 347 nucleotides BWI76_RS21785: BWI76_RS21785 - IS6 family transposase, at 4,552,134 to 4,552,736 _RS21785 BWI76_RS21790: BWI76_RS21790 - hypothetical protein, at 4,553,089 to 4,553,412 _RS21790 BWI76_RS21795: BWI76_RS21795 - EAL domain-containing protein, at 4,553,418 to 4,554,110 _RS21795 BWI76_RS21800: BWI76_RS21800 - MASE2 domain/diguanylate cyclase, at 4,554,458 to 4,555,516 _RS21800 Position (kb) 4553 4554 4555Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4552.484 kb on - strand, within BWI76_RS21785at 4552.497 kb on + strand, within BWI76_RS21785at 4552.516 kb on + strand, within BWI76_RS21785at 4552.524 kb on - strand, within BWI76_RS21785at 4552.565 kb on + strand, within BWI76_RS21785at 4552.566 kb on + strand, within BWI76_RS21785at 4552.568 kb on - strand, within BWI76_RS21785at 4552.573 kb on - strand, within BWI76_RS21785at 4552.578 kb on - strand, within BWI76_RS21785at 4552.682 kb on - strandat 4552.686 kb on + strandat 4552.707 kb on + strandat 4552.723 kb on - strandat 4552.738 kb on - strandat 4552.739 kb on + strandat 4552.749 kb on + strandat 4552.755 kb on + strandat 4552.755 kb on + strandat 4552.756 kb on - strandat 4552.763 kb on - strandat 4552.770 kb on + strandat 4552.770 kb on + strandat 4552.770 kb on + strandat 4552.770 kb on + strandat 4552.770 kb on + strandat 4552.770 kb on + strandat 4552.770 kb on + strandat 4552.770 kb on + strandat 4552.770 kb on + strandat 4552.770 kb on + strandat 4552.770 kb on + strandat 4552.770 kb on + strandat 4552.770 kb on + strandat 4552.770 kb on + strandat 4552.770 kb on + strandat 4552.770 kb on + strandat 4552.778 kb on - strandat 4552.778 kb on - strandat 4552.778 kb on - strandat 4552.778 kb on - strandat 4552.778 kb on - strandat 4552.778 kb on - strandat 4552.778 kb on - strandat 4552.778 kb on - strandat 4552.778 kb on - strandat 4552.778 kb on - strandat 4552.778 kb on - strandat 4552.778 kb on - strandat 4552.778 kb on - strandat 4552.778 kb on - strandat 4552.778 kb on - strandat 4552.788 kb on - strandat 4552.788 kb on - strandat 4552.789 kb on - strandat 4552.807 kb on + strandat 4552.811 kb on + strandat 4552.815 kb on - strandat 4552.822 kb on + strandat 4552.822 kb on + strandat 4552.831 kb on + strandat 4552.841 kb on + strandat 4552.841 kb on + strandat 4552.869 kb on - strandat 4552.899 kb on - strandat 4552.916 kb on + strandat 4552.917 kb on + strandat 4552.922 kb on + strandat 4552.924 kb on + strandat 4552.924 kb on + strandat 4552.924 kb on + strandat 4552.932 kb on + strandat 4552.932 kb on - strandat 4552.932 kb on - strandat 4552.932 kb on - strandat 4552.939 kb on + strandat 4552.949 kb on - strandat 4552.951 kb on + strandat 4552.964 kb on + strandat 4552.975 kb on + strandat 4552.988 kb on - strandat 4553.038 kb on + strandat 4553.208 kb on - strandat 4553.208 kb on - strand, within BWI76_RS21790at 4553.265 kb on - strand, within BWI76_RS21790at 4553.270 kb on - strand, within BWI76_RS21790at 4553.666 kb on - strand, within BWI76_RS21795at 4553.712 kb on + strand, within BWI76_RS21795at 4553.845 kb on - strand, within BWI76_RS21795at 4553.929 kb on - strand, within BWI76_RS21795at 4553.967 kb on + strand, within BWI76_RS21795at 4553.975 kb on - strand, within BWI76_RS21795at 4554.062 kb on + strandat 4554.107 kb on - strandat 4554.107 kb on - strandat 4554.210 kb on + strandat 4554.328 kb on - strandat 4554.333 kb on - strandat 4554.335 kb on - strandat 4554.338 kb on + strandat 4554.338 kb on - strandat 4554.340 kb on - strandat 4554.340 kb on - strandat 4554.340 kb on - strandat 4554.346 kb on - strandat 4554.346 kb on - strandat 4554.455 kb on + strandat 4554.477 kb on - strandat 4554.675 kb on - strand, within BWI76_RS21800at 4554.726 kb on + strand, within BWI76_RS21800at 4554.726 kb on + strand, within BWI76_RS21800at 4554.736 kb on - strand, within BWI76_RS21800at 4554.741 kb on - strand, within BWI76_RS21800at 4554.751 kb on + strandat 4554.759 kb on - strand, within BWI76_RS21800at 4554.759 kb on - strand, within BWI76_RS21800at 4554.759 kb on - strand, within BWI76_RS21800at 4554.773 kb on - strand, within BWI76_RS21800at 4555.013 kb on - strand, within BWI76_RS21800at 4555.016 kb on - strandat 4555.029 kb on - strand, within BWI76_RS21800at 4555.044 kb on - strand, within BWI76_RS21800at 4555.045 kb on - strand, within BWI76_RS21800at 4555.046 kb on + strand, within BWI76_RS21800at 4555.054 kb on - strand, within BWI76_RS21800at 4555.054 kb on - strand, within BWI76_RS21800at 4555.054 kb on - strand, within BWI76_RS21800

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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4,552,484 - BWI76_RS21785 0.58 +0.5
4,552,497 + BWI76_RS21785 0.60 -0.1
4,552,516 + BWI76_RS21785 0.63 -0.5
4,552,524 - BWI76_RS21785 0.65 -0.1
4,552,565 + BWI76_RS21785 0.71 -1.3
4,552,566 + BWI76_RS21785 0.72 +0.1
4,552,568 - BWI76_RS21785 0.72 +2.5
4,552,573 - BWI76_RS21785 0.73 +1.6
4,552,578 - BWI76_RS21785 0.74 -1.6
4,552,682 - -0.4
4,552,686 + -3.2
4,552,707 + -3.2
4,552,723 - +0.5
4,552,738 - -0.4
4,552,739 + +0.9
4,552,749 + -2.5
4,552,755 + -0.0
4,552,755 + -1.5
4,552,756 - -2.0
4,552,763 - +0.1
4,552,770 + -0.5
4,552,770 + -0.3
4,552,770 + -3.4
4,552,770 + -0.0
4,552,770 + -3.0
4,552,770 + +1.2
4,552,770 + -0.3
4,552,770 + +0.8
4,552,770 + -0.9
4,552,770 + +0.8
4,552,770 + -0.7
4,552,770 + -0.9
4,552,770 + +1.4
4,552,770 + +0.6
4,552,770 + -0.6
4,552,770 + -0.7
4,552,778 - -2.1
4,552,778 - -1.4
4,552,778 - +1.2
4,552,778 - +0.2
4,552,778 - -0.9
4,552,778 - -0.5
4,552,778 - -0.2
4,552,778 - +0.4
4,552,778 - +0.1
4,552,778 - +2.1
4,552,778 - -0.7
4,552,778 - -0.9
4,552,778 - +0.5
4,552,778 - -0.3
4,552,778 - -1.1
4,552,788 - +1.9
4,552,788 - -2.7
4,552,789 - +0.8
4,552,807 + +0.6
4,552,811 + +0.9
4,552,815 - -2.0
4,552,822 + +0.5
4,552,822 + +0.2
4,552,831 + +0.5
4,552,841 + -1.1
4,552,841 + +0.4
4,552,869 - -0.7
4,552,899 - -1.8
4,552,916 + -1.5
4,552,917 + -0.5
4,552,922 + +2.7
4,552,924 + +0.5
4,552,924 + -0.1
4,552,924 + -0.2
4,552,932 + +0.5
4,552,932 - -1.5
4,552,932 - -2.3
4,552,932 - +1.6
4,552,939 + +0.8
4,552,949 - -2.8
4,552,951 + +2.6
4,552,964 + +0.1
4,552,975 + -0.1
4,552,988 - +1.7
4,553,038 + +2.2
4,553,208 - -0.3
4,553,208 - BWI76_RS21790 0.37 -0.0
4,553,265 - BWI76_RS21790 0.54 +0.5
4,553,270 - BWI76_RS21790 0.56 +0.7
4,553,666 - BWI76_RS21795 0.36 -0.5
4,553,712 + BWI76_RS21795 0.42 -1.6
4,553,845 - BWI76_RS21795 0.62 -1.1
4,553,929 - BWI76_RS21795 0.74 +0.5
4,553,967 + BWI76_RS21795 0.79 -2.8
4,553,975 - BWI76_RS21795 0.80 -0.4
4,554,062 + -0.9
4,554,107 - +1.1
4,554,107 - +0.5
4,554,210 + +1.1
4,554,328 - -0.0
4,554,333 - -1.1
4,554,335 - +0.6
4,554,338 + +0.3
4,554,338 - +0.2
4,554,340 - +0.5
4,554,340 - +1.9
4,554,340 - -1.8
4,554,346 - +2.1
4,554,346 - -1.9
4,554,455 + +0.9
4,554,477 - +0.2
4,554,675 - BWI76_RS21800 0.20 +1.2
4,554,726 + BWI76_RS21800 0.25 -0.7
4,554,726 + BWI76_RS21800 0.25 -0.9
4,554,736 - BWI76_RS21800 0.26 +4.0
4,554,741 - BWI76_RS21800 0.27 -1.4
4,554,751 + +1.1
4,554,759 - BWI76_RS21800 0.28 -0.2
4,554,759 - BWI76_RS21800 0.28 +0.9
4,554,759 - BWI76_RS21800 0.28 +3.7
4,554,773 - BWI76_RS21800 0.30 -0.9
4,555,013 - BWI76_RS21800 0.52 +0.3
4,555,016 - +0.1
4,555,029 - BWI76_RS21800 0.54 -1.9
4,555,044 - BWI76_RS21800 0.55 -0.3
4,555,045 - BWI76_RS21800 0.55 +0.5
4,555,046 + BWI76_RS21800 0.56 +0.2
4,555,054 - BWI76_RS21800 0.56 +0.1
4,555,054 - BWI76_RS21800 0.56 +1.2
4,555,054 - BWI76_RS21800 0.56 -2.3

Or see this region's nucleotide sequence