Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18930

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18925 and BWI76_RS18930 overlap by 4 nucleotidesBWI76_RS18930 and BWI76_RS18935 overlap by 4 nucleotides BWI76_RS18925: BWI76_RS18925 - histidinol dehydrogenase, at 3,925,538 to 3,926,842 _RS18925 BWI76_RS18930: BWI76_RS18930 - histidinol-phosphate transaminase, at 3,926,839 to 3,927,900 _RS18930 BWI76_RS18935: BWI76_RS18935 - bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase, at 3,927,897 to 3,928,964 _RS18935 Position (kb) 3926 3927 3928Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 3925.961 kb on + strandat 3925.969 kb on - strand, within BWI76_RS18925at 3926.059 kb on + strand, within BWI76_RS18925at 3926.096 kb on + strand, within BWI76_RS18925at 3926.508 kb on + strand, within BWI76_RS18925at 3926.719 kb on - strandat 3926.802 kb on + strandat 3926.851 kb on + strandat 3926.960 kb on + strand, within BWI76_RS18930at 3927.342 kb on + strand, within BWI76_RS18930at 3927.645 kb on - strand, within BWI76_RS18930at 3927.841 kb on + strandat 3928.350 kb on + strand, within BWI76_RS18935at 3928.358 kb on - strand, within BWI76_RS18935at 3928.547 kb on + strand, within BWI76_RS18935at 3928.788 kb on + strand, within BWI76_RS18935at 3928.813 kb on + strand, within BWI76_RS18935at 3928.820 kb on - strand, within BWI76_RS18935at 3928.839 kb on - strand, within BWI76_RS18935

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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3,925,961 + +1.0
3,925,969 - BWI76_RS18925 0.33 -7.3
3,926,059 + BWI76_RS18925 0.40 -5.2
3,926,096 + BWI76_RS18925 0.43 -1.2
3,926,508 + BWI76_RS18925 0.74 -3.8
3,926,719 - -3.4
3,926,802 + -4.8
3,926,851 + -5.6
3,926,960 + BWI76_RS18930 0.11 -4.4
3,927,342 + BWI76_RS18930 0.47 -5.0
3,927,645 - BWI76_RS18930 0.76 -6.3
3,927,841 + -6.7
3,928,350 + BWI76_RS18935 0.42 -4.8
3,928,358 - BWI76_RS18935 0.43 -4.7
3,928,547 + BWI76_RS18935 0.61 -1.2
3,928,788 + BWI76_RS18935 0.83 -6.1
3,928,813 + BWI76_RS18935 0.86 -3.5
3,928,820 - BWI76_RS18935 0.86 -2.9
3,928,839 - BWI76_RS18935 0.88 -6.2

Or see this region's nucleotide sequence