Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18640

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18635 and BWI76_RS18640 are separated by 797 nucleotidesBWI76_RS18640 and BWI76_RS18645 are separated by 39 nucleotidesBWI76_RS18645 and BWI76_RS18650 are separated by 71 nucleotides BWI76_RS18635: BWI76_RS18635 - tRNA-Asn, at 3,864,132 to 3,864,207 _RS18635 BWI76_RS18640: BWI76_RS18640 - helix-turn-helix transcriptional regulator, at 3,865,005 to 3,865,505 _RS18640 BWI76_RS18645: BWI76_RS18645 - type-1 fimbrial protein subunit A, at 3,865,545 to 3,866,090 _RS18645 BWI76_RS18650: BWI76_RS18650 - fimbrial protein, at 3,866,162 to 3,866,698 _RS18650 Position (kb) 3865 3866Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3864.285 kb on + strandat 3864.312 kb on + strandat 3864.318 kb on + strandat 3864.388 kb on - strandat 3864.391 kb on + strandat 3864.412 kb on - strandat 3864.508 kb on + strandat 3864.609 kb on + strandat 3864.617 kb on - strandat 3864.617 kb on - strandat 3864.617 kb on - strandat 3864.624 kb on + strandat 3864.624 kb on + strandat 3864.624 kb on + strandat 3864.624 kb on + strandat 3864.632 kb on - strandat 3864.632 kb on - strandat 3864.632 kb on - strandat 3864.632 kb on - strandat 3864.632 kb on - strandat 3864.632 kb on - strandat 3864.632 kb on - strandat 3864.632 kb on - strandat 3864.632 kb on - strandat 3864.632 kb on - strandat 3864.632 kb on - strandat 3864.632 kb on - strandat 3864.632 kb on - strandat 3864.632 kb on - strandat 3864.635 kb on - strandat 3864.635 kb on - strandat 3864.635 kb on - strandat 3864.635 kb on - strandat 3864.635 kb on - strandat 3864.635 kb on - strandat 3864.635 kb on - strandat 3864.635 kb on - strandat 3864.635 kb on - strandat 3864.637 kb on + strandat 3864.645 kb on - strandat 3864.645 kb on - strandat 3864.645 kb on - strandat 3864.645 kb on - strandat 3864.645 kb on - strandat 3864.923 kb on + strandat 3864.923 kb on + strandat 3864.923 kb on + strandat 3864.923 kb on + strandat 3864.923 kb on + strandat 3864.923 kb on + strandat 3864.933 kb on + strandat 3864.934 kb on + strandat 3864.944 kb on + strandat 3864.968 kb on + strandat 3864.968 kb on + strandat 3864.968 kb on + strandat 3864.968 kb on + strandat 3864.976 kb on - strandat 3864.979 kb on + strandat 3864.979 kb on + strandat 3864.979 kb on + strandat 3864.985 kb on + strandat 3865.002 kb on + strandat 3865.002 kb on + strandat 3865.002 kb on + strandat 3865.002 kb on + strandat 3865.002 kb on + strandat 3865.002 kb on + strandat 3865.042 kb on + strandat 3865.067 kb on + strand, within BWI76_RS18640at 3865.125 kb on - strand, within BWI76_RS18640at 3865.196 kb on + strand, within BWI76_RS18640at 3865.209 kb on - strand, within BWI76_RS18640at 3865.227 kb on + strand, within BWI76_RS18640at 3865.335 kb on + strand, within BWI76_RS18640at 3865.335 kb on + strand, within BWI76_RS18640at 3865.346 kb on + strand, within BWI76_RS18640at 3865.356 kb on + strand, within BWI76_RS18640at 3865.356 kb on + strand, within BWI76_RS18640at 3865.357 kb on - strand, within BWI76_RS18640at 3865.363 kb on + strand, within BWI76_RS18640at 3865.363 kb on + strand, within BWI76_RS18640at 3865.365 kb on + strand, within BWI76_RS18640at 3865.365 kb on + strand, within BWI76_RS18640at 3865.375 kb on + strand, within BWI76_RS18640at 3865.375 kb on + strand, within BWI76_RS18640at 3865.380 kb on + strand, within BWI76_RS18640at 3865.384 kb on + strand, within BWI76_RS18640at 3865.547 kb on + strandat 3865.580 kb on + strandat 3865.588 kb on + strandat 3865.588 kb on - strandat 3865.590 kb on - strandat 3865.593 kb on + strandat 3865.594 kb on + strandat 3865.623 kb on + strand, within BWI76_RS18645at 3865.633 kb on + strand, within BWI76_RS18645at 3865.672 kb on + strand, within BWI76_RS18645at 3865.680 kb on - strand, within BWI76_RS18645at 3865.685 kb on - strand, within BWI76_RS18645at 3865.687 kb on - strand, within BWI76_RS18645at 3865.704 kb on + strand, within BWI76_RS18645at 3865.721 kb on - strand, within BWI76_RS18645at 3865.726 kb on - strand, within BWI76_RS18645at 3865.726 kb on - strand, within BWI76_RS18645at 3865.756 kb on + strand, within BWI76_RS18645at 3865.759 kb on - strand, within BWI76_RS18645at 3865.761 kb on + strand, within BWI76_RS18645at 3865.887 kb on - strand, within BWI76_RS18645at 3865.907 kb on - strand, within BWI76_RS18645at 3865.909 kb on + strand, within BWI76_RS18645at 3865.990 kb on + strand, within BWI76_RS18645at 3866.119 kb on + strandat 3866.394 kb on + strand, within BWI76_RS18650at 3866.404 kb on + strand, within BWI76_RS18650at 3866.438 kb on + strand, within BWI76_RS18650

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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3,864,285 + +0.0
3,864,312 + +0.4
3,864,318 + +3.0
3,864,388 - -3.2
3,864,391 + +0.6
3,864,412 - -1.9
3,864,508 + +0.3
3,864,609 + +0.2
3,864,617 - +1.1
3,864,617 - +1.2
3,864,617 - -1.5
3,864,624 + +0.4
3,864,624 + -2.8
3,864,624 + -1.0
3,864,624 + -0.7
3,864,632 - +1.6
3,864,632 - -1.9
3,864,632 - -2.6
3,864,632 - +0.2
3,864,632 - -2.5
3,864,632 - -1.0
3,864,632 - -2.6
3,864,632 - +0.4
3,864,632 - +0.5
3,864,632 - +0.1
3,864,632 - -1.2
3,864,632 - +0.3
3,864,632 - -0.9
3,864,632 - -1.4
3,864,635 - +0.2
3,864,635 - +3.0
3,864,635 - +1.1
3,864,635 - -1.2
3,864,635 - +0.4
3,864,635 - -0.4
3,864,635 - -0.7
3,864,635 - -1.7
3,864,635 - -1.7
3,864,637 + +1.0
3,864,645 - +1.6
3,864,645 - -0.5
3,864,645 - +0.4
3,864,645 - -3.7
3,864,645 - +0.5
3,864,923 + -0.8
3,864,923 + -0.3
3,864,923 + -0.2
3,864,923 + +0.6
3,864,923 + -0.6
3,864,923 + -1.3
3,864,933 + -2.1
3,864,934 + +0.3
3,864,944 + -0.6
3,864,968 + -1.1
3,864,968 + -0.5
3,864,968 + -1.2
3,864,968 + +0.8
3,864,976 - -0.4
3,864,979 + -0.6
3,864,979 + +0.5
3,864,979 + -0.4
3,864,985 + +0.1
3,865,002 + +1.6
3,865,002 + +2.1
3,865,002 + +0.3
3,865,002 + -1.0
3,865,002 + -1.0
3,865,002 + +0.6
3,865,042 + -2.2
3,865,067 + BWI76_RS18640 0.12 -1.9
3,865,125 - BWI76_RS18640 0.24 +1.7
3,865,196 + BWI76_RS18640 0.38 -0.3
3,865,209 - BWI76_RS18640 0.41 -0.6
3,865,227 + BWI76_RS18640 0.44 -1.6
3,865,335 + BWI76_RS18640 0.66 -1.5
3,865,335 + BWI76_RS18640 0.66 +0.5
3,865,346 + BWI76_RS18640 0.68 -0.3
3,865,356 + BWI76_RS18640 0.70 -1.2
3,865,356 + BWI76_RS18640 0.70 +0.2
3,865,357 - BWI76_RS18640 0.70 +0.5
3,865,363 + BWI76_RS18640 0.71 -2.8
3,865,363 + BWI76_RS18640 0.71 -0.2
3,865,365 + BWI76_RS18640 0.72 -2.9
3,865,365 + BWI76_RS18640 0.72 -1.5
3,865,375 + BWI76_RS18640 0.74 +0.0
3,865,375 + BWI76_RS18640 0.74 -1.0
3,865,380 + BWI76_RS18640 0.75 -0.9
3,865,384 + BWI76_RS18640 0.76 -0.6
3,865,547 + -1.4
3,865,580 + +1.3
3,865,588 + +1.9
3,865,588 - -0.2
3,865,590 - -1.0
3,865,593 + +0.2
3,865,594 + -1.9
3,865,623 + BWI76_RS18645 0.14 +0.2
3,865,633 + BWI76_RS18645 0.16 +0.8
3,865,672 + BWI76_RS18645 0.23 +2.0
3,865,680 - BWI76_RS18645 0.25 -0.4
3,865,685 - BWI76_RS18645 0.26 -0.7
3,865,687 - BWI76_RS18645 0.26 -0.1
3,865,704 + BWI76_RS18645 0.29 +0.8
3,865,721 - BWI76_RS18645 0.32 -0.6
3,865,726 - BWI76_RS18645 0.33 -1.1
3,865,726 - BWI76_RS18645 0.33 -2.2
3,865,756 + BWI76_RS18645 0.39 +1.3
3,865,759 - BWI76_RS18645 0.39 +1.1
3,865,761 + BWI76_RS18645 0.40 +0.6
3,865,887 - BWI76_RS18645 0.63 -0.8
3,865,907 - BWI76_RS18645 0.66 +0.0
3,865,909 + BWI76_RS18645 0.67 -0.3
3,865,990 + BWI76_RS18645 0.82 +0.6
3,866,119 + +0.4
3,866,394 + BWI76_RS18650 0.43 -0.3
3,866,404 + BWI76_RS18650 0.45 +0.9
3,866,438 + BWI76_RS18650 0.51 -1.3

Or see this region's nucleotide sequence