Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17845

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS17835 and BWI76_RS17840 are separated by 9 nucleotidesBWI76_RS17840 and BWI76_RS17845 are separated by 11 nucleotidesBWI76_RS17845 and BWI76_RS17850 are separated by 525 nucleotides BWI76_RS17835: BWI76_RS17835 - sugar ABC transporter permease, at 3,707,218 to 3,708,057 _RS17835 BWI76_RS17840: BWI76_RS17840 - sugar ABC transporter permease, at 3,708,067 to 3,709,008 _RS17840 BWI76_RS17845: BWI76_RS17845 - extracellular solute-binding protein, at 3,709,020 to 3,710,309 _RS17845 BWI76_RS17850: BWI76_RS17850 - alginate lyase, at 3,710,835 to 3,712,073 _RS17850 Position (kb) 3709 3710 3711Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3708.210 kb on + strand, within BWI76_RS17840at 3708.218 kb on + strand, within BWI76_RS17840at 3708.297 kb on - strand, within BWI76_RS17840at 3708.516 kb on + strand, within BWI76_RS17840at 3708.659 kb on + strand, within BWI76_RS17840at 3708.719 kb on + strand, within BWI76_RS17840at 3708.761 kb on - strand, within BWI76_RS17840at 3708.797 kb on - strand, within BWI76_RS17840at 3708.797 kb on - strand, within BWI76_RS17840at 3708.923 kb on + strandat 3709.330 kb on - strand, within BWI76_RS17845at 3709.423 kb on + strand, within BWI76_RS17845at 3709.431 kb on - strand, within BWI76_RS17845at 3709.431 kb on - strand, within BWI76_RS17845at 3709.431 kb on - strand, within BWI76_RS17845at 3709.458 kb on + strand, within BWI76_RS17845at 3709.469 kb on + strand, within BWI76_RS17845at 3709.472 kb on - strand, within BWI76_RS17845at 3709.504 kb on + strand, within BWI76_RS17845at 3709.953 kb on + strand, within BWI76_RS17845at 3709.961 kb on - strand, within BWI76_RS17845at 3710.027 kb on - strand, within BWI76_RS17845at 3710.108 kb on + strand, within BWI76_RS17845at 3710.116 kb on - strand, within BWI76_RS17845at 3710.214 kb on + strandat 3710.214 kb on + strandat 3710.214 kb on + strandat 3710.223 kb on + strandat 3710.230 kb on - strandat 3710.231 kb on - strandat 3710.239 kb on + strandat 3710.249 kb on + strandat 3710.249 kb on + strandat 3710.249 kb on + strandat 3710.249 kb on + strandat 3710.252 kb on - strandat 3710.252 kb on - strandat 3710.252 kb on - strandat 3710.255 kb on + strandat 3710.255 kb on + strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.263 kb on - strandat 3710.263 kb on - strandat 3710.263 kb on - strandat 3710.263 kb on - strandat 3710.263 kb on - strandat 3710.263 kb on - strandat 3710.263 kb on - strandat 3710.263 kb on - strandat 3710.307 kb on + strandat 3710.307 kb on + strandat 3710.313 kb on - strandat 3710.385 kb on + strandat 3710.701 kb on + strandat 3710.701 kb on + strandat 3710.709 kb on - strandat 3710.818 kb on + strandat 3710.833 kb on - strandat 3710.839 kb on + strandat 3710.839 kb on + strandat 3710.839 kb on + strandat 3710.839 kb on + strandat 3710.847 kb on - strandat 3710.847 kb on - strandat 3710.847 kb on - strandat 3710.847 kb on - strandat 3710.847 kb on - strandat 3710.847 kb on - strandat 3710.848 kb on - strandat 3710.857 kb on - strandat 3710.859 kb on + strandat 3710.861 kb on + strandat 3710.867 kb on - strandat 3710.869 kb on - strandat 3710.871 kb on + strandat 3710.876 kb on + strandat 3710.876 kb on + strandat 3710.879 kb on - strandat 3710.911 kb on - strandat 3710.921 kb on - strandat 3710.923 kb on + strandat 3710.923 kb on - strandat 3711.132 kb on + strand, within BWI76_RS17850at 3711.133 kb on - strand, within BWI76_RS17850at 3711.135 kb on - strand, within BWI76_RS17850at 3711.142 kb on + strand, within BWI76_RS17850at 3711.308 kb on + strand, within BWI76_RS17850

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
3,708,210 + BWI76_RS17840 0.15 +0.6
3,708,218 + BWI76_RS17840 0.16 +0.7
3,708,297 - BWI76_RS17840 0.24 +1.0
3,708,516 + BWI76_RS17840 0.48 -0.1
3,708,659 + BWI76_RS17840 0.63 +0.2
3,708,719 + BWI76_RS17840 0.69 +1.7
3,708,761 - BWI76_RS17840 0.74 -0.2
3,708,797 - BWI76_RS17840 0.77 -0.1
3,708,797 - BWI76_RS17840 0.77 -0.2
3,708,923 + -1.7
3,709,330 - BWI76_RS17845 0.24 +4.4
3,709,423 + BWI76_RS17845 0.31 +0.8
3,709,431 - BWI76_RS17845 0.32 +1.5
3,709,431 - BWI76_RS17845 0.32 +0.7
3,709,431 - BWI76_RS17845 0.32 -0.9
3,709,458 + BWI76_RS17845 0.34 +0.6
3,709,469 + BWI76_RS17845 0.35 +0.0
3,709,472 - BWI76_RS17845 0.35 +0.5
3,709,504 + BWI76_RS17845 0.38 -0.1
3,709,953 + BWI76_RS17845 0.72 +0.3
3,709,961 - BWI76_RS17845 0.73 -0.1
3,710,027 - BWI76_RS17845 0.78 -0.1
3,710,108 + BWI76_RS17845 0.84 -0.6
3,710,116 - BWI76_RS17845 0.85 +0.3
3,710,214 + +0.7
3,710,214 + +2.1
3,710,214 + -1.3
3,710,223 + +1.0
3,710,230 - -3.5
3,710,231 - +0.2
3,710,239 + -2.3
3,710,249 + +0.2
3,710,249 + -0.9
3,710,249 + +2.0
3,710,249 + +0.1
3,710,252 - -1.7
3,710,252 - +0.2
3,710,252 - -2.3
3,710,255 + -0.6
3,710,255 + -0.6
3,710,257 - -2.7
3,710,257 - -0.9
3,710,257 - +0.4
3,710,257 - +2.2
3,710,257 - -2.1
3,710,257 - -0.1
3,710,257 - -0.9
3,710,257 - -0.0
3,710,257 - -0.1
3,710,257 - -2.3
3,710,257 - -0.1
3,710,257 - -0.0
3,710,257 - -0.3
3,710,257 - +1.2
3,710,263 - +0.1
3,710,263 - -0.9
3,710,263 - +0.2
3,710,263 - -3.0
3,710,263 - -0.0
3,710,263 - +0.1
3,710,263 - -1.9
3,710,263 - -0.9
3,710,307 + +0.4
3,710,307 + +2.0
3,710,313 - +0.9
3,710,385 + -0.0
3,710,701 + -2.5
3,710,701 + +0.6
3,710,709 - +0.8
3,710,818 + -0.6
3,710,833 - +0.4
3,710,839 + -1.0
3,710,839 + +0.7
3,710,839 + +0.2
3,710,839 + +1.0
3,710,847 - -0.4
3,710,847 - +1.4
3,710,847 - +0.6
3,710,847 - -0.4
3,710,847 - -2.0
3,710,847 - -0.5
3,710,848 - -0.3
3,710,857 - +1.4
3,710,859 + +1.2
3,710,861 + +2.1
3,710,867 - -0.0
3,710,869 - -0.8
3,710,871 + +0.9
3,710,876 + +1.5
3,710,876 + -1.9
3,710,879 - -0.3
3,710,911 - +4.0
3,710,921 - -1.9
3,710,923 + -1.1
3,710,923 - -0.4
3,711,132 + BWI76_RS17850 0.24 -0.6
3,711,133 - BWI76_RS17850 0.24 -1.3
3,711,135 - BWI76_RS17850 0.24 +0.8
3,711,142 + BWI76_RS17850 0.25 -1.0
3,711,308 + BWI76_RS17850 0.38 +0.1

Or see this region's nucleotide sequence