Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13625

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13620 and BWI76_RS13625 are separated by 145 nucleotidesBWI76_RS13625 and BWI76_RS13630 are separated by 214 nucleotidesBWI76_RS13630 and BWI76_RS13635 overlap by 4 nucleotides BWI76_RS13620: BWI76_RS13620 - positive regulator for rhaBAD operon, at 2,839,042 to 2,839,863 _RS13620 BWI76_RS13625: BWI76_RS13625 - hypothetical protein, at 2,840,009 to 2,840,590 _RS13625 BWI76_RS13630: BWI76_RS13630 - ABC transporter, at 2,840,805 to 2,841,506 _RS13630 BWI76_RS13635: BWI76_RS13635 - extracellular solute-binding protein, at 2,841,503 to 2,842,471 _RS13635 Position (kb) 2840 2841Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2839.017 kb on + strandat 2839.017 kb on - strandat 2839.025 kb on - strandat 2839.044 kb on - strandat 2839.080 kb on + strandat 2839.080 kb on + strandat 2839.092 kb on + strandat 2839.093 kb on - strandat 2839.094 kb on - strandat 2839.101 kb on - strandat 2839.101 kb on - strandat 2839.101 kb on - strandat 2839.111 kb on + strandat 2839.115 kb on - strandat 2839.115 kb on - strandat 2839.157 kb on + strand, within BWI76_RS13620at 2839.160 kb on - strand, within BWI76_RS13620at 2839.160 kb on - strand, within BWI76_RS13620at 2839.160 kb on - strand, within BWI76_RS13620at 2839.183 kb on - strand, within BWI76_RS13620at 2839.183 kb on - strand, within BWI76_RS13620at 2839.190 kb on - strand, within BWI76_RS13620at 2839.205 kb on + strand, within BWI76_RS13620at 2839.261 kb on - strand, within BWI76_RS13620at 2839.261 kb on - strand, within BWI76_RS13620at 2839.319 kb on + strand, within BWI76_RS13620at 2839.347 kb on + strand, within BWI76_RS13620at 2839.350 kb on - strand, within BWI76_RS13620at 2839.399 kb on + strand, within BWI76_RS13620at 2839.399 kb on + strand, within BWI76_RS13620at 2839.399 kb on + strand, within BWI76_RS13620at 2839.406 kb on + strand, within BWI76_RS13620at 2839.407 kb on - strand, within BWI76_RS13620at 2839.409 kb on + strand, within BWI76_RS13620at 2839.414 kb on - strand, within BWI76_RS13620at 2839.442 kb on + strand, within BWI76_RS13620at 2839.442 kb on + strand, within BWI76_RS13620at 2839.478 kb on - strand, within BWI76_RS13620at 2839.533 kb on + strand, within BWI76_RS13620at 2839.544 kb on + strand, within BWI76_RS13620at 2839.554 kb on + strand, within BWI76_RS13620at 2839.566 kb on + strand, within BWI76_RS13620at 2839.566 kb on + strand, within BWI76_RS13620at 2839.566 kb on + strand, within BWI76_RS13620at 2839.566 kb on + strand, within BWI76_RS13620at 2839.568 kb on + strand, within BWI76_RS13620at 2839.574 kb on - strand, within BWI76_RS13620at 2839.574 kb on - strand, within BWI76_RS13620at 2839.576 kb on + strand, within BWI76_RS13620at 2839.579 kb on - strand, within BWI76_RS13620at 2839.579 kb on - strand, within BWI76_RS13620at 2839.579 kb on - strand, within BWI76_RS13620at 2839.586 kb on + strand, within BWI76_RS13620at 2839.586 kb on + strand, within BWI76_RS13620at 2839.586 kb on + strand, within BWI76_RS13620at 2839.586 kb on + strand, within BWI76_RS13620at 2839.586 kb on + strand, within BWI76_RS13620at 2839.594 kb on - strand, within BWI76_RS13620at 2839.594 kb on - strand, within BWI76_RS13620at 2839.594 kb on - strand, within BWI76_RS13620at 2839.601 kb on + strand, within BWI76_RS13620at 2839.609 kb on - strand, within BWI76_RS13620at 2839.609 kb on - strand, within BWI76_RS13620at 2839.681 kb on - strand, within BWI76_RS13620at 2839.736 kb on + strand, within BWI76_RS13620at 2839.751 kb on + strand, within BWI76_RS13620at 2839.754 kb on - strand, within BWI76_RS13620at 2839.827 kb on + strandat 2839.843 kb on - strandat 2839.858 kb on + strandat 2839.870 kb on + strandat 2839.934 kb on - strandat 2840.157 kb on + strand, within BWI76_RS13625at 2840.371 kb on + strand, within BWI76_RS13625at 2840.492 kb on - strand, within BWI76_RS13625at 2840.546 kb on - strandat 2840.672 kb on + strandat 2840.701 kb on - strandat 2840.769 kb on + strandat 2840.905 kb on - strand, within BWI76_RS13630at 2841.158 kb on + strand, within BWI76_RS13630at 2841.166 kb on - strand, within BWI76_RS13630at 2841.243 kb on - strand, within BWI76_RS13630at 2841.320 kb on - strandat 2841.396 kb on + strand, within BWI76_RS13630at 2841.466 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,839,017 + -0.0
2,839,017 - +2.1
2,839,025 - -2.3
2,839,044 - -0.5
2,839,080 + -0.5
2,839,080 + -0.6
2,839,092 + +1.8
2,839,093 - -2.9
2,839,094 - -0.1
2,839,101 - -0.0
2,839,101 - +0.4
2,839,101 - +0.5
2,839,111 + +1.8
2,839,115 - +0.2
2,839,115 - -0.9
2,839,157 + BWI76_RS13620 0.14 -0.4
2,839,160 - BWI76_RS13620 0.14 -3.4
2,839,160 - BWI76_RS13620 0.14 +0.5
2,839,160 - BWI76_RS13620 0.14 -2.2
2,839,183 - BWI76_RS13620 0.17 -3.8
2,839,183 - BWI76_RS13620 0.17 -1.6
2,839,190 - BWI76_RS13620 0.18 -3.0
2,839,205 + BWI76_RS13620 0.20 -1.5
2,839,261 - BWI76_RS13620 0.27 -0.8
2,839,261 - BWI76_RS13620 0.27 +0.2
2,839,319 + BWI76_RS13620 0.34 -0.5
2,839,347 + BWI76_RS13620 0.37 +1.0
2,839,350 - BWI76_RS13620 0.37 +0.0
2,839,399 + BWI76_RS13620 0.43 -1.9
2,839,399 + BWI76_RS13620 0.43 -0.2
2,839,399 + BWI76_RS13620 0.43 -2.9
2,839,406 + BWI76_RS13620 0.44 -3.0
2,839,407 - BWI76_RS13620 0.44 -0.8
2,839,409 + BWI76_RS13620 0.45 +0.6
2,839,414 - BWI76_RS13620 0.45 +1.6
2,839,442 + BWI76_RS13620 0.49 -0.4
2,839,442 + BWI76_RS13620 0.49 -0.8
2,839,478 - BWI76_RS13620 0.53 +0.1
2,839,533 + BWI76_RS13620 0.60 +0.4
2,839,544 + BWI76_RS13620 0.61 -1.3
2,839,554 + BWI76_RS13620 0.62 -0.2
2,839,566 + BWI76_RS13620 0.64 -1.0
2,839,566 + BWI76_RS13620 0.64 +0.7
2,839,566 + BWI76_RS13620 0.64 +1.1
2,839,566 + BWI76_RS13620 0.64 -0.9
2,839,568 + BWI76_RS13620 0.64 +0.4
2,839,574 - BWI76_RS13620 0.65 -1.3
2,839,574 - BWI76_RS13620 0.65 +0.3
2,839,576 + BWI76_RS13620 0.65 -3.0
2,839,579 - BWI76_RS13620 0.65 -1.3
2,839,579 - BWI76_RS13620 0.65 -3.0
2,839,579 - BWI76_RS13620 0.65 -3.6
2,839,586 + BWI76_RS13620 0.66 +0.6
2,839,586 + BWI76_RS13620 0.66 +1.7
2,839,586 + BWI76_RS13620 0.66 -2.7
2,839,586 + BWI76_RS13620 0.66 +0.2
2,839,586 + BWI76_RS13620 0.66 -0.3
2,839,594 - BWI76_RS13620 0.67 -0.0
2,839,594 - BWI76_RS13620 0.67 +0.8
2,839,594 - BWI76_RS13620 0.67 -1.0
2,839,601 + BWI76_RS13620 0.68 +0.7
2,839,609 - BWI76_RS13620 0.69 -1.4
2,839,609 - BWI76_RS13620 0.69 -0.8
2,839,681 - BWI76_RS13620 0.78 +1.6
2,839,736 + BWI76_RS13620 0.84 +0.1
2,839,751 + BWI76_RS13620 0.86 -1.6
2,839,754 - BWI76_RS13620 0.87 -0.3
2,839,827 + +0.6
2,839,843 - +0.6
2,839,858 + +0.6
2,839,870 + +0.3
2,839,934 - -2.8
2,840,157 + BWI76_RS13625 0.25 -1.6
2,840,371 + BWI76_RS13625 0.62 -2.6
2,840,492 - BWI76_RS13625 0.83 +0.1
2,840,546 - +0.0
2,840,672 + +0.2
2,840,701 - -1.4
2,840,769 + -0.6
2,840,905 - BWI76_RS13630 0.14 +0.0
2,841,158 + BWI76_RS13630 0.50 -1.5
2,841,166 - BWI76_RS13630 0.51 -0.7
2,841,243 - BWI76_RS13630 0.62 +0.9
2,841,320 - -1.0
2,841,396 + BWI76_RS13630 0.84 +0.0
2,841,466 - -1.5

Or see this region's nucleotide sequence