Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13295

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS13285 and BWI76_RS13290 overlap by 4 nucleotidesBWI76_RS13290 and BWI76_RS13295 are separated by 239 nucleotidesBWI76_RS13295 and BWI76_RS13300 are separated by 42 nucleotides BWI76_RS13285: BWI76_RS13285 - protocatechuate 3,4-dioxygenase subunit alpha, at 2,770,001 to 2,770,621 _RS13285 BWI76_RS13290: BWI76_RS13290 - protocatechuate 3,4-dioxygenase subunit beta, at 2,770,618 to 2,771,358 _RS13290 BWI76_RS13295: BWI76_RS13295 - DUF1338 domain-containing protein, at 2,771,598 to 2,772,941 _RS13295 BWI76_RS13300: BWI76_RS13300 - carboxylesterase, at 2,772,984 to 2,774,492 _RS13300 Position (kb) 2771 2772 2773Strain fitness (log2 ratio) -2 -1 0 1at 2770.653 kb on + strandat 2770.661 kb on - strandat 2770.888 kb on + strand, within BWI76_RS13290at 2770.919 kb on - strand, within BWI76_RS13290at 2771.203 kb on - strand, within BWI76_RS13290at 2771.475 kb on + strandat 2771.602 kb on - strandat 2771.622 kb on - strandat 2771.689 kb on - strandat 2771.718 kb on - strandat 2771.737 kb on + strand, within BWI76_RS13295at 2771.759 kb on + strand, within BWI76_RS13295at 2772.295 kb on + strand, within BWI76_RS13295at 2772.445 kb on + strand, within BWI76_RS13295at 2772.476 kb on - strand, within BWI76_RS13295at 2772.518 kb on - strand, within BWI76_RS13295at 2772.518 kb on - strand, within BWI76_RS13295at 2772.594 kb on + strand, within BWI76_RS13295at 2773.015 kb on - strandat 2773.167 kb on + strand, within BWI76_RS13300at 2773.240 kb on + strand, within BWI76_RS13300at 2773.367 kb on - strandat 2773.727 kb on + strand, within BWI76_RS13300

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
2,770,653 + +0.0
2,770,661 - -0.7
2,770,888 + BWI76_RS13290 0.36 -2.5
2,770,919 - BWI76_RS13290 0.41 -1.1
2,771,203 - BWI76_RS13290 0.79 +0.4
2,771,475 + +0.6
2,771,602 - -0.3
2,771,622 - -0.7
2,771,689 - +1.0
2,771,718 - +0.4
2,771,737 + BWI76_RS13295 0.10 +1.4
2,771,759 + BWI76_RS13295 0.12 +0.6
2,772,295 + BWI76_RS13295 0.52 +0.2
2,772,445 + BWI76_RS13295 0.63 -0.1
2,772,476 - BWI76_RS13295 0.65 -0.1
2,772,518 - BWI76_RS13295 0.68 -0.1
2,772,518 - BWI76_RS13295 0.68 -0.0
2,772,594 + BWI76_RS13295 0.74 -0.2
2,773,015 - +1.1
2,773,167 + BWI76_RS13300 0.12 +0.0
2,773,240 + BWI76_RS13300 0.17 +0.5
2,773,367 - -0.7
2,773,727 + BWI76_RS13300 0.49 +0.7

Or see this region's nucleotide sequence