Experiment: 10 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3039 and DvMF_3040 are separated by 443 nucleotides DvMF_3040 and DvMF_3041 overlap by 4 nucleotides DvMF_3041 and DvMF_3042 are separated by 104 nucleotides
DvMF_3039: DvMF_3039 - peptidase M24 (RefSeq), at 3,836,186 to 3,837,445
_3039
DvMF_3040: DvMF_3040 - coenzyme A binding protein (RefSeq), at 3,837,889 to 3,838,311
_3040
DvMF_3041: DvMF_3041 - protein of unknown function UPF0153 (RefSeq), at 3,838,308 to 3,838,835
_3041
DvMF_3042: DvMF_3042 - heat shock protein DnaJ domain protein (RefSeq), at 3,838,940 to 3,839,908
_3042
Position (kb)
3837
3838
3839 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3836.952 kb on + strand, within DvMF_3039 at 3837.001 kb on - strand, within DvMF_3039 at 3837.001 kb on - strand, within DvMF_3039 at 3837.001 kb on - strand, within DvMF_3039 at 3837.040 kb on + strand, within DvMF_3039 at 3837.060 kb on + strand, within DvMF_3039 at 3837.060 kb on + strand, within DvMF_3039 at 3837.429 kb on + strand at 3837.491 kb on + strand at 3837.499 kb on - strand at 3837.499 kb on - strand at 3837.546 kb on - strand at 3837.670 kb on - strand at 3837.943 kb on - strand at 3838.586 kb on + strand, within DvMF_3041 at 3838.594 kb on - strand, within DvMF_3041 at 3839.067 kb on - strand, within DvMF_3042 at 3839.307 kb on - strand, within DvMF_3042
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 30C remove 3,836,952 + DvMF_3039 0.61 +0.2 3,837,001 - DvMF_3039 0.65 +0.3 3,837,001 - DvMF_3039 0.65 -0.5 3,837,001 - DvMF_3039 0.65 +0.3 3,837,040 + DvMF_3039 0.68 +0.1 3,837,060 + DvMF_3039 0.69 -0.8 3,837,060 + DvMF_3039 0.69 +0.1 3,837,429 + -0.5 3,837,491 + +0.8 3,837,499 - +0.9 3,837,499 - +1.1 3,837,546 - +3.3 3,837,670 - +0.7 3,837,943 - -0.3 3,838,586 + DvMF_3041 0.53 +0.2 3,838,594 - DvMF_3041 0.54 +0.2 3,839,067 - DvMF_3042 0.13 -0.0 3,839,307 - DvMF_3042 0.38 -0.2
Or see this region's nucleotide sequence