Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2534

Experiment: 10 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2533 and DvMF_2534 are separated by 7 nucleotidesDvMF_2534 and DvMF_2535 are separated by 113 nucleotidesDvMF_2535 and DvMF_2536 are separated by 27 nucleotides DvMF_2533: DvMF_2533 - formate dehydrogenase, alpha subunit (RefSeq), at 3,196,674 to 3,199,706 _2533 DvMF_2534: DvMF_2534 - formate dehydrogenase beta subunit (RefSeq), at 3,199,714 to 3,200,466 _2534 DvMF_2535: DvMF_2535 - Methyltransferase type 11 (RefSeq), at 3,200,580 to 3,201,257 _2535 DvMF_2536: DvMF_2536 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,201,285 to 3,202,718 _2536 Position (kb) 3199 3200 3201Strain fitness (log2 ratio) -1 0 1at 3198.806 kb on - strand, within DvMF_2533at 3198.886 kb on - strand, within DvMF_2533at 3198.913 kb on + strand, within DvMF_2533at 3199.001 kb on + strand, within DvMF_2533at 3199.011 kb on + strand, within DvMF_2533at 3199.220 kb on - strand, within DvMF_2533at 3199.248 kb on + strand, within DvMF_2533at 3199.248 kb on + strand, within DvMF_2533at 3199.249 kb on - strand, within DvMF_2533at 3199.256 kb on - strand, within DvMF_2533at 3199.256 kb on - strand, within DvMF_2533at 3199.268 kb on + strand, within DvMF_2533at 3199.302 kb on - strand, within DvMF_2533at 3199.419 kb on + strandat 3199.701 kb on + strandat 3199.755 kb on - strandat 3199.878 kb on + strand, within DvMF_2534at 3199.900 kb on + strand, within DvMF_2534at 3199.952 kb on + strand, within DvMF_2534at 3199.960 kb on - strand, within DvMF_2534at 3200.340 kb on - strand, within DvMF_2534at 3200.461 kb on + strandat 3200.461 kb on + strandat 3200.461 kb on + strandat 3200.469 kb on - strandat 3200.469 kb on - strandat 3200.498 kb on - strandat 3200.577 kb on + strandat 3200.818 kb on + strand, within DvMF_2535at 3200.818 kb on + strand, within DvMF_2535at 3200.826 kb on - strand, within DvMF_2535at 3201.142 kb on - strand, within DvMF_2535at 3201.215 kb on + strandat 3201.223 kb on - strandat 3201.339 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 30C
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3,198,806 - DvMF_2533 0.70 +0.4
3,198,886 - DvMF_2533 0.73 +0.6
3,198,913 + DvMF_2533 0.74 +0.0
3,199,001 + DvMF_2533 0.77 +0.4
3,199,011 + DvMF_2533 0.77 +0.2
3,199,220 - DvMF_2533 0.84 +1.7
3,199,248 + DvMF_2533 0.85 +0.5
3,199,248 + DvMF_2533 0.85 +0.4
3,199,249 - DvMF_2533 0.85 +0.8
3,199,256 - DvMF_2533 0.85 -1.2
3,199,256 - DvMF_2533 0.85 +0.9
3,199,268 + DvMF_2533 0.86 +0.8
3,199,302 - DvMF_2533 0.87 +0.4
3,199,419 + +1.4
3,199,701 + -0.4
3,199,755 - +0.6
3,199,878 + DvMF_2534 0.22 -0.6
3,199,900 + DvMF_2534 0.25 +0.4
3,199,952 + DvMF_2534 0.32 +0.3
3,199,960 - DvMF_2534 0.33 +0.2
3,200,340 - DvMF_2534 0.83 -0.0
3,200,461 + +0.4
3,200,461 + +0.6
3,200,461 + +1.6
3,200,469 - -0.2
3,200,469 - +0.6
3,200,498 - +0.5
3,200,577 + -0.6
3,200,818 + DvMF_2535 0.35 +0.4
3,200,818 + DvMF_2535 0.35 +0.0
3,200,826 - DvMF_2535 0.36 +0.8
3,201,142 - DvMF_2535 0.83 -0.3
3,201,215 + -0.2
3,201,223 - +0.3
3,201,339 + -0.3

Or see this region's nucleotide sequence