Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2367

Experiment: 10 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2366 and DvMF_2367 are separated by 473 nucleotidesDvMF_2367 and DvMF_2368 are separated by 102 nucleotidesDvMF_2368 and DvMF_2369 are separated by 142 nucleotides DvMF_2366: DvMF_2366 - ferric uptake regulator, Fur family (RefSeq), at 2,987,218 to 2,987,613 _2366 DvMF_2367: DvMF_2367 - Rubrerythrin (RefSeq), at 2,988,087 to 2,988,662 _2367 DvMF_2368: DvMF_2368 - Rubredoxin-type Fe(Cys)4 protein (RefSeq), at 2,988,765 to 2,988,992 _2368 DvMF_2369: DvMF_2369 - TPR repeat-containing protein (RefSeq), at 2,989,135 to 2,989,950 _2369 Position (kb) 2988 2989Strain fitness (log2 ratio) -1 0 1at 2987.124 kb on + strandat 2987.350 kb on - strand, within DvMF_2366at 2987.639 kb on - strandat 2987.670 kb on - strandat 2987.715 kb on + strandat 2987.762 kb on + strandat 2988.027 kb on - strandat 2988.094 kb on - strandat 2988.360 kb on - strand, within DvMF_2367at 2988.424 kb on + strand, within DvMF_2367at 2988.666 kb on + strandat 2988.782 kb on + strandat 2988.898 kb on + strand, within DvMF_2368at 2989.265 kb on + strand, within DvMF_2369at 2989.379 kb on - strand, within DvMF_2369at 2989.446 kb on - strand, within DvMF_2369at 2989.627 kb on - strand, within DvMF_2369

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 30C
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2,987,124 + +1.2
2,987,350 - DvMF_2366 0.33 -0.4
2,987,639 - +0.6
2,987,670 - +0.9
2,987,715 + +0.8
2,987,762 + +0.9
2,988,027 - +0.0
2,988,094 - +0.5
2,988,360 - DvMF_2367 0.47 +0.4
2,988,424 + DvMF_2367 0.59 +0.7
2,988,666 + +0.4
2,988,782 + +0.4
2,988,898 + DvMF_2368 0.58 +0.6
2,989,265 + DvMF_2369 0.16 +0.3
2,989,379 - DvMF_2369 0.30 +1.5
2,989,446 - DvMF_2369 0.38 -0.1
2,989,627 - DvMF_2369 0.60 -0.4

Or see this region's nucleotide sequence