Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2366

Experiment: 10 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2365 and DvMF_2366 are separated by 212 nucleotidesDvMF_2366 and DvMF_2367 are separated by 473 nucleotides DvMF_2365: DvMF_2365 - outer membrane efflux protein (RefSeq), at 2,985,557 to 2,987,005 _2365 DvMF_2366: DvMF_2366 - ferric uptake regulator, Fur family (RefSeq), at 2,987,218 to 2,987,613 _2366 DvMF_2367: DvMF_2367 - Rubrerythrin (RefSeq), at 2,988,087 to 2,988,662 _2367 Position (kb) 2987 2988Strain fitness (log2 ratio) -3 -2 -1 0 1at 2986.259 kb on - strand, within DvMF_2365at 2986.285 kb on - strand, within DvMF_2365at 2986.566 kb on - strand, within DvMF_2365at 2986.646 kb on + strand, within DvMF_2365at 2986.665 kb on - strand, within DvMF_2365at 2986.739 kb on + strand, within DvMF_2365at 2986.863 kb on - strandat 2986.913 kb on + strandat 2986.999 kb on + strandat 2987.032 kb on - strandat 2987.124 kb on + strandat 2987.350 kb on - strand, within DvMF_2366at 2987.639 kb on - strandat 2987.670 kb on - strandat 2987.715 kb on + strandat 2987.762 kb on + strandat 2988.027 kb on - strandat 2988.094 kb on - strandat 2988.360 kb on - strand, within DvMF_2367at 2988.424 kb on + strand, within DvMF_2367

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 30C
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2,986,259 - DvMF_2365 0.48 -1.9
2,986,285 - DvMF_2365 0.50 -3.1
2,986,566 - DvMF_2365 0.70 -2.0
2,986,646 + DvMF_2365 0.75 -2.8
2,986,665 - DvMF_2365 0.76 -2.9
2,986,739 + DvMF_2365 0.82 -2.2
2,986,863 - -2.5
2,986,913 + -1.5
2,986,999 + +0.6
2,987,032 - -0.1
2,987,124 + +1.2
2,987,350 - DvMF_2366 0.33 -0.4
2,987,639 - +0.6
2,987,670 - +0.9
2,987,715 + +0.8
2,987,762 + +0.9
2,988,027 - +0.0
2,988,094 - +0.5
2,988,360 - DvMF_2367 0.47 +0.4
2,988,424 + DvMF_2367 0.59 +0.7

Or see this region's nucleotide sequence