Experiment: 10 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2259 and DvMF_2260 overlap by 4 nucleotides DvMF_2260 and DvMF_2261 overlap by 13 nucleotides DvMF_2261 and DvMF_2262 are separated by 139 nucleotides
DvMF_2259: DvMF_2259 - ABC transporter related (RefSeq), at 2,838,525 to 2,839,349
_2259
DvMF_2260: DvMF_2260 - cobalamin synthesis protein P47K (RefSeq), at 2,839,346 to 2,840,125
_2260
DvMF_2261: DvMF_2261 - hypothetical protein (RefSeq), at 2,840,113 to 2,841,198
_2261
DvMF_2262: DvMF_2262 - hypothetical protein (RefSeq), at 2,841,338 to 2,842,216
_2262
Position (kb)
2840
2841
2842 Strain fitness (log2 ratio)
-1
0
1 at 2839.179 kb on + strand, within DvMF_2259 at 2839.187 kb on - strand, within DvMF_2259 at 2839.187 kb on - strand, within DvMF_2259 at 2839.384 kb on + strand at 2839.416 kb on + strand at 2839.417 kb on + strand at 2839.474 kb on - strand, within DvMF_2260 at 2839.576 kb on - strand, within DvMF_2260 at 2839.605 kb on - strand, within DvMF_2260 at 2839.615 kb on - strand, within DvMF_2260 at 2839.619 kb on - strand, within DvMF_2260 at 2839.619 kb on - strand, within DvMF_2260 at 2839.851 kb on - strand, within DvMF_2260 at 2839.860 kb on + strand, within DvMF_2260 at 2839.901 kb on - strand, within DvMF_2260 at 2839.927 kb on + strand, within DvMF_2260 at 2840.029 kb on - strand, within DvMF_2260 at 2840.233 kb on + strand, within DvMF_2261 at 2840.509 kb on - strand, within DvMF_2261 at 2840.811 kb on + strand, within DvMF_2261 at 2840.843 kb on + strand, within DvMF_2261 at 2840.993 kb on - strand, within DvMF_2261 at 2841.168 kb on - strand at 2841.205 kb on + strand at 2841.269 kb on - strand at 2841.320 kb on - strand at 2841.446 kb on - strand, within DvMF_2262 at 2841.512 kb on + strand, within DvMF_2262 at 2841.613 kb on + strand, within DvMF_2262 at 2841.621 kb on - strand, within DvMF_2262 at 2841.699 kb on - strand, within DvMF_2262 at 2841.754 kb on + strand, within DvMF_2262 at 2841.754 kb on + strand, within DvMF_2262 at 2841.754 kb on + strand, within DvMF_2262 at 2841.754 kb on + strand, within DvMF_2262 at 2841.762 kb on - strand, within DvMF_2262 at 2841.762 kb on - strand, within DvMF_2262 at 2841.813 kb on + strand, within DvMF_2262 at 2841.939 kb on - strand, within DvMF_2262 at 2842.002 kb on - strand, within DvMF_2262
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 30C remove 2,839,179 + DvMF_2259 0.79 +1.0 2,839,187 - DvMF_2259 0.80 +0.3 2,839,187 - DvMF_2259 0.80 +0.2 2,839,384 + +0.6 2,839,416 + +0.5 2,839,417 + +0.7 2,839,474 - DvMF_2260 0.16 +0.5 2,839,576 - DvMF_2260 0.29 +0.2 2,839,605 - DvMF_2260 0.33 +1.1 2,839,615 - DvMF_2260 0.34 +1.3 2,839,619 - DvMF_2260 0.35 -0.1 2,839,619 - DvMF_2260 0.35 +0.5 2,839,851 - DvMF_2260 0.65 +1.4 2,839,860 + DvMF_2260 0.66 +1.0 2,839,901 - DvMF_2260 0.71 +0.1 2,839,927 + DvMF_2260 0.74 +0.4 2,840,029 - DvMF_2260 0.88 +0.6 2,840,233 + DvMF_2261 0.11 +0.2 2,840,509 - DvMF_2261 0.36 +0.2 2,840,811 + DvMF_2261 0.64 +0.6 2,840,843 + DvMF_2261 0.67 +0.1 2,840,993 - DvMF_2261 0.81 +0.5 2,841,168 - +0.4 2,841,205 + +0.3 2,841,269 - -0.1 2,841,320 - +0.8 2,841,446 - DvMF_2262 0.12 +0.3 2,841,512 + DvMF_2262 0.20 +0.1 2,841,613 + DvMF_2262 0.31 +0.1 2,841,621 - DvMF_2262 0.32 +0.1 2,841,699 - DvMF_2262 0.41 +1.1 2,841,754 + DvMF_2262 0.47 +0.2 2,841,754 + DvMF_2262 0.47 +0.7 2,841,754 + DvMF_2262 0.47 +0.2 2,841,754 + DvMF_2262 0.47 -0.2 2,841,762 - DvMF_2262 0.48 -0.0 2,841,762 - DvMF_2262 0.48 -0.0 2,841,813 + DvMF_2262 0.54 +0.7 2,841,939 - DvMF_2262 0.68 +0.2 2,842,002 - DvMF_2262 0.76 +0.2
Or see this region's nucleotide sequence