Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1912

Experiment: 10 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1911 and DvMF_1912 are separated by 157 nucleotides DvMF_1911: DvMF_1911 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,355,235 to 2,356,368 _1911 DvMF_1912: DvMF_1912 - glycosyl transferase family 2 (RefSeq), at 2,356,526 to 2,357,554 _1912 Position (kb) 2356 2357 2358Strain fitness (log2 ratio) -3 -2 -1 0 1at 2355.661 kb on + strand, within DvMF_1911at 2355.661 kb on + strand, within DvMF_1911at 2356.086 kb on + strand, within DvMF_1911at 2356.091 kb on + strand, within DvMF_1911at 2356.187 kb on - strand, within DvMF_1911at 2356.703 kb on - strand, within DvMF_1912at 2356.916 kb on + strand, within DvMF_1912at 2356.999 kb on + strand, within DvMF_1912at 2357.337 kb on - strand, within DvMF_1912at 2357.580 kb on + strandat 2357.598 kb on - strandat 2357.637 kb on - strandat 2358.013 kb on + strandat 2358.140 kb on - strandat 2358.326 kb on + strandat 2358.372 kb on - strandat 2358.478 kb on - strandat 2358.478 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 30C
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2,355,661 + DvMF_1911 0.38 -2.9
2,355,661 + DvMF_1911 0.38 -2.7
2,356,086 + DvMF_1911 0.75 -2.8
2,356,091 + DvMF_1911 0.75 -1.6
2,356,187 - DvMF_1911 0.84 -2.5
2,356,703 - DvMF_1912 0.17 -3.4
2,356,916 + DvMF_1912 0.38 -3.6
2,356,999 + DvMF_1912 0.46 -2.7
2,357,337 - DvMF_1912 0.79 -2.3
2,357,580 + -0.8
2,357,598 - +0.6
2,357,637 - +0.2
2,358,013 + +0.5
2,358,140 - +0.8
2,358,326 + +0.3
2,358,372 - +0.8
2,358,478 - +1.1
2,358,478 - +0.6

Or see this region's nucleotide sequence