Experiment: 10 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1879 and DvMF_1880 are separated by 122 nucleotides DvMF_1880 and DvMF_1881 are separated by 195 nucleotides
DvMF_1879: DvMF_1879 - ATP-dependent transcriptional regulator, MalT-like, LuxR family (RefSeq), at 2,310,199 to 2,312,718
_1879
DvMF_1880: DvMF_1880 - outer membrane autotransporter barrel domain protein (RefSeq), at 2,312,841 to 2,315,651
_1880
DvMF_1881: DvMF_1881 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,315,847 to 2,317,625
_1881
Position (kb)
2312
2313
2314
2315
2316 Strain fitness (log2 ratio)
-1
0
1 at 2311.855 kb on + strand, within DvMF_1879 at 2311.863 kb on - strand, within DvMF_1879 at 2311.922 kb on + strand, within DvMF_1879 at 2312.134 kb on + strand, within DvMF_1879 at 2312.264 kb on + strand, within DvMF_1879 at 2312.339 kb on + strand, within DvMF_1879 at 2312.435 kb on + strand, within DvMF_1879 at 2312.548 kb on - strand at 2312.629 kb on + strand at 2312.788 kb on - strand at 2312.826 kb on + strand at 2313.012 kb on - strand at 2313.139 kb on - strand, within DvMF_1880 at 2313.224 kb on + strand, within DvMF_1880 at 2313.376 kb on - strand, within DvMF_1880 at 2313.812 kb on + strand, within DvMF_1880 at 2314.094 kb on - strand, within DvMF_1880 at 2314.119 kb on + strand, within DvMF_1880 at 2314.202 kb on + strand, within DvMF_1880 at 2314.202 kb on + strand, within DvMF_1880 at 2314.235 kb on - strand, within DvMF_1880 at 2314.392 kb on - strand, within DvMF_1880 at 2314.440 kb on + strand, within DvMF_1880 at 2314.577 kb on - strand, within DvMF_1880 at 2314.634 kb on - strand, within DvMF_1880 at 2314.686 kb on - strand, within DvMF_1880 at 2314.705 kb on + strand, within DvMF_1880 at 2314.762 kb on - strand, within DvMF_1880 at 2314.766 kb on + strand, within DvMF_1880 at 2314.767 kb on + strand, within DvMF_1880 at 2314.767 kb on + strand, within DvMF_1880 at 2314.952 kb on + strand, within DvMF_1880 at 2315.031 kb on + strand, within DvMF_1880 at 2315.081 kb on + strand, within DvMF_1880 at 2315.102 kb on + strand, within DvMF_1880 at 2315.147 kb on + strand, within DvMF_1880 at 2315.199 kb on + strand, within DvMF_1880 at 2315.336 kb on - strand, within DvMF_1880 at 2315.591 kb on + strand at 2315.591 kb on + strand at 2315.591 kb on + strand at 2315.739 kb on + strand at 2316.249 kb on + strand, within DvMF_1881 at 2316.257 kb on - strand, within DvMF_1881 at 2316.529 kb on - strand, within DvMF_1881 at 2316.565 kb on + strand, within DvMF_1881
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 30C remove 2,311,855 + DvMF_1879 0.66 +1.2 2,311,863 - DvMF_1879 0.66 +0.6 2,311,922 + DvMF_1879 0.68 +0.2 2,312,134 + DvMF_1879 0.77 +0.4 2,312,264 + DvMF_1879 0.82 +0.6 2,312,339 + DvMF_1879 0.85 -0.1 2,312,435 + DvMF_1879 0.89 -0.2 2,312,548 - +0.8 2,312,629 + +0.4 2,312,788 - +0.5 2,312,826 + +0.5 2,313,012 - +0.1 2,313,139 - DvMF_1880 0.11 +0.8 2,313,224 + DvMF_1880 0.14 +0.6 2,313,376 - DvMF_1880 0.19 +0.6 2,313,812 + DvMF_1880 0.35 +0.7 2,314,094 - DvMF_1880 0.45 +0.4 2,314,119 + DvMF_1880 0.45 +0.2 2,314,202 + DvMF_1880 0.48 +0.5 2,314,202 + DvMF_1880 0.48 +0.5 2,314,235 - DvMF_1880 0.50 -0.0 2,314,392 - DvMF_1880 0.55 +0.3 2,314,440 + DvMF_1880 0.57 +0.4 2,314,577 - DvMF_1880 0.62 -0.7 2,314,634 - DvMF_1880 0.64 +0.4 2,314,686 - DvMF_1880 0.66 +0.6 2,314,705 + DvMF_1880 0.66 +0.3 2,314,762 - DvMF_1880 0.68 -0.0 2,314,766 + DvMF_1880 0.68 +0.6 2,314,767 + DvMF_1880 0.69 +0.5 2,314,767 + DvMF_1880 0.69 +0.4 2,314,952 + DvMF_1880 0.75 +0.3 2,315,031 + DvMF_1880 0.78 +0.7 2,315,081 + DvMF_1880 0.80 +0.3 2,315,102 + DvMF_1880 0.80 +0.5 2,315,147 + DvMF_1880 0.82 +0.2 2,315,199 + DvMF_1880 0.84 -0.0 2,315,336 - DvMF_1880 0.89 +0.5 2,315,591 + -0.3 2,315,591 + +0.5 2,315,591 + +0.6 2,315,739 + +0.7 2,316,249 + DvMF_1881 0.23 +0.3 2,316,257 - DvMF_1881 0.23 +0.2 2,316,529 - DvMF_1881 0.38 +0.5 2,316,565 + DvMF_1881 0.40 +0.6
Or see this region's nucleotide sequence