Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1880

Experiment: 10 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1879 and DvMF_1880 are separated by 122 nucleotidesDvMF_1880 and DvMF_1881 are separated by 195 nucleotides DvMF_1879: DvMF_1879 - ATP-dependent transcriptional regulator, MalT-like, LuxR family (RefSeq), at 2,310,199 to 2,312,718 _1879 DvMF_1880: DvMF_1880 - outer membrane autotransporter barrel domain protein (RefSeq), at 2,312,841 to 2,315,651 _1880 DvMF_1881: DvMF_1881 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,315,847 to 2,317,625 _1881 Position (kb) 2312 2313 2314 2315 2316Strain fitness (log2 ratio) -1 0 1at 2311.855 kb on + strand, within DvMF_1879at 2311.863 kb on - strand, within DvMF_1879at 2311.922 kb on + strand, within DvMF_1879at 2312.134 kb on + strand, within DvMF_1879at 2312.264 kb on + strand, within DvMF_1879at 2312.339 kb on + strand, within DvMF_1879at 2312.435 kb on + strand, within DvMF_1879at 2312.548 kb on - strandat 2312.629 kb on + strandat 2312.788 kb on - strandat 2312.826 kb on + strandat 2313.012 kb on - strandat 2313.139 kb on - strand, within DvMF_1880at 2313.224 kb on + strand, within DvMF_1880at 2313.376 kb on - strand, within DvMF_1880at 2313.812 kb on + strand, within DvMF_1880at 2314.094 kb on - strand, within DvMF_1880at 2314.119 kb on + strand, within DvMF_1880at 2314.202 kb on + strand, within DvMF_1880at 2314.202 kb on + strand, within DvMF_1880at 2314.235 kb on - strand, within DvMF_1880at 2314.392 kb on - strand, within DvMF_1880at 2314.440 kb on + strand, within DvMF_1880at 2314.577 kb on - strand, within DvMF_1880at 2314.634 kb on - strand, within DvMF_1880at 2314.686 kb on - strand, within DvMF_1880at 2314.705 kb on + strand, within DvMF_1880at 2314.762 kb on - strand, within DvMF_1880at 2314.766 kb on + strand, within DvMF_1880at 2314.767 kb on + strand, within DvMF_1880at 2314.767 kb on + strand, within DvMF_1880at 2314.952 kb on + strand, within DvMF_1880at 2315.031 kb on + strand, within DvMF_1880at 2315.081 kb on + strand, within DvMF_1880at 2315.102 kb on + strand, within DvMF_1880at 2315.147 kb on + strand, within DvMF_1880at 2315.199 kb on + strand, within DvMF_1880at 2315.336 kb on - strand, within DvMF_1880at 2315.591 kb on + strandat 2315.591 kb on + strandat 2315.591 kb on + strandat 2315.739 kb on + strandat 2316.249 kb on + strand, within DvMF_1881at 2316.257 kb on - strand, within DvMF_1881at 2316.529 kb on - strand, within DvMF_1881at 2316.565 kb on + strand, within DvMF_1881

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 30C
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2,311,855 + DvMF_1879 0.66 +1.2
2,311,863 - DvMF_1879 0.66 +0.6
2,311,922 + DvMF_1879 0.68 +0.2
2,312,134 + DvMF_1879 0.77 +0.4
2,312,264 + DvMF_1879 0.82 +0.6
2,312,339 + DvMF_1879 0.85 -0.1
2,312,435 + DvMF_1879 0.89 -0.2
2,312,548 - +0.8
2,312,629 + +0.4
2,312,788 - +0.5
2,312,826 + +0.5
2,313,012 - +0.1
2,313,139 - DvMF_1880 0.11 +0.8
2,313,224 + DvMF_1880 0.14 +0.6
2,313,376 - DvMF_1880 0.19 +0.6
2,313,812 + DvMF_1880 0.35 +0.7
2,314,094 - DvMF_1880 0.45 +0.4
2,314,119 + DvMF_1880 0.45 +0.2
2,314,202 + DvMF_1880 0.48 +0.5
2,314,202 + DvMF_1880 0.48 +0.5
2,314,235 - DvMF_1880 0.50 -0.0
2,314,392 - DvMF_1880 0.55 +0.3
2,314,440 + DvMF_1880 0.57 +0.4
2,314,577 - DvMF_1880 0.62 -0.7
2,314,634 - DvMF_1880 0.64 +0.4
2,314,686 - DvMF_1880 0.66 +0.6
2,314,705 + DvMF_1880 0.66 +0.3
2,314,762 - DvMF_1880 0.68 -0.0
2,314,766 + DvMF_1880 0.68 +0.6
2,314,767 + DvMF_1880 0.69 +0.5
2,314,767 + DvMF_1880 0.69 +0.4
2,314,952 + DvMF_1880 0.75 +0.3
2,315,031 + DvMF_1880 0.78 +0.7
2,315,081 + DvMF_1880 0.80 +0.3
2,315,102 + DvMF_1880 0.80 +0.5
2,315,147 + DvMF_1880 0.82 +0.2
2,315,199 + DvMF_1880 0.84 -0.0
2,315,336 - DvMF_1880 0.89 +0.5
2,315,591 + -0.3
2,315,591 + +0.5
2,315,591 + +0.6
2,315,739 + +0.7
2,316,249 + DvMF_1881 0.23 +0.3
2,316,257 - DvMF_1881 0.23 +0.2
2,316,529 - DvMF_1881 0.38 +0.5
2,316,565 + DvMF_1881 0.40 +0.6

Or see this region's nucleotide sequence