Experiment: 10 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1878 and DvMF_1879 are separated by 821 nucleotides DvMF_1879 and DvMF_1880 are separated by 122 nucleotides
DvMF_1878: DvMF_1878 - Hemerythrin HHE cation binding domain protein (RefSeq), at 2,308,946 to 2,309,377
_1878
DvMF_1879: DvMF_1879 - ATP-dependent transcriptional regulator, MalT-like, LuxR family (RefSeq), at 2,310,199 to 2,312,718
_1879
DvMF_1880: DvMF_1880 - outer membrane autotransporter barrel domain protein (RefSeq), at 2,312,841 to 2,315,651
_1880
Position (kb)
2310
2311
2312
2313 Strain fitness (log2 ratio)
-1
0
1
2 at 2309.279 kb on + strand, within DvMF_1878 at 2309.302 kb on + strand, within DvMF_1878 at 2309.310 kb on - strand, within DvMF_1878 at 2309.310 kb on - strand, within DvMF_1878 at 2309.310 kb on - strand, within DvMF_1878 at 2309.310 kb on - strand, within DvMF_1878 at 2309.371 kb on + strand at 2309.534 kb on - strand at 2309.624 kb on - strand at 2309.654 kb on - strand at 2310.251 kb on - strand at 2310.391 kb on - strand at 2311.073 kb on - strand, within DvMF_1879 at 2311.082 kb on + strand, within DvMF_1879 at 2311.099 kb on + strand, within DvMF_1879 at 2311.099 kb on + strand, within DvMF_1879 at 2311.203 kb on - strand, within DvMF_1879 at 2311.748 kb on + strand, within DvMF_1879 at 2311.748 kb on + strand, within DvMF_1879 at 2311.748 kb on + strand, within DvMF_1879 at 2311.748 kb on + strand, within DvMF_1879 at 2311.748 kb on + strand, within DvMF_1879 at 2311.756 kb on - strand, within DvMF_1879 at 2311.758 kb on + strand, within DvMF_1879 at 2311.789 kb on - strand, within DvMF_1879 at 2311.855 kb on + strand, within DvMF_1879 at 2311.863 kb on - strand, within DvMF_1879 at 2311.922 kb on + strand, within DvMF_1879 at 2312.134 kb on + strand, within DvMF_1879 at 2312.264 kb on + strand, within DvMF_1879 at 2312.339 kb on + strand, within DvMF_1879 at 2312.435 kb on + strand, within DvMF_1879 at 2312.548 kb on - strand at 2312.629 kb on + strand at 2312.788 kb on - strand at 2312.826 kb on + strand at 2313.012 kb on - strand at 2313.139 kb on - strand, within DvMF_1880 at 2313.224 kb on + strand, within DvMF_1880 at 2313.376 kb on - strand, within DvMF_1880
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 30C remove 2,309,279 + DvMF_1878 0.77 +1.9 2,309,302 + DvMF_1878 0.82 +0.1 2,309,310 - DvMF_1878 0.84 +0.2 2,309,310 - DvMF_1878 0.84 +0.0 2,309,310 - DvMF_1878 0.84 +0.7 2,309,310 - DvMF_1878 0.84 +0.7 2,309,371 + +0.5 2,309,534 - +0.9 2,309,624 - +0.3 2,309,654 - +0.1 2,310,251 - +1.6 2,310,391 - +0.5 2,311,073 - DvMF_1879 0.35 +0.4 2,311,082 + DvMF_1879 0.35 +0.2 2,311,099 + DvMF_1879 0.36 +0.2 2,311,099 + DvMF_1879 0.36 +0.4 2,311,203 - DvMF_1879 0.40 +0.4 2,311,748 + DvMF_1879 0.61 +0.5 2,311,748 + DvMF_1879 0.61 +0.7 2,311,748 + DvMF_1879 0.61 +0.5 2,311,748 + DvMF_1879 0.61 -1.0 2,311,748 + DvMF_1879 0.61 +0.1 2,311,756 - DvMF_1879 0.62 +0.4 2,311,758 + DvMF_1879 0.62 +0.2 2,311,789 - DvMF_1879 0.63 +0.3 2,311,855 + DvMF_1879 0.66 +1.2 2,311,863 - DvMF_1879 0.66 +0.6 2,311,922 + DvMF_1879 0.68 +0.2 2,312,134 + DvMF_1879 0.77 +0.4 2,312,264 + DvMF_1879 0.82 +0.6 2,312,339 + DvMF_1879 0.85 -0.1 2,312,435 + DvMF_1879 0.89 -0.2 2,312,548 - +0.8 2,312,629 + +0.4 2,312,788 - +0.5 2,312,826 + +0.5 2,313,012 - +0.1 2,313,139 - DvMF_1880 0.11 +0.8 2,313,224 + DvMF_1880 0.14 +0.6 2,313,376 - DvMF_1880 0.19 +0.6
Or see this region's nucleotide sequence