Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1879

Experiment: 10 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1878 and DvMF_1879 are separated by 821 nucleotidesDvMF_1879 and DvMF_1880 are separated by 122 nucleotides DvMF_1878: DvMF_1878 - Hemerythrin HHE cation binding domain protein (RefSeq), at 2,308,946 to 2,309,377 _1878 DvMF_1879: DvMF_1879 - ATP-dependent transcriptional regulator, MalT-like, LuxR family (RefSeq), at 2,310,199 to 2,312,718 _1879 DvMF_1880: DvMF_1880 - outer membrane autotransporter barrel domain protein (RefSeq), at 2,312,841 to 2,315,651 _1880 Position (kb) 2310 2311 2312 2313Strain fitness (log2 ratio) -1 0 1 2at 2309.279 kb on + strand, within DvMF_1878at 2309.302 kb on + strand, within DvMF_1878at 2309.310 kb on - strand, within DvMF_1878at 2309.310 kb on - strand, within DvMF_1878at 2309.310 kb on - strand, within DvMF_1878at 2309.310 kb on - strand, within DvMF_1878at 2309.371 kb on + strandat 2309.534 kb on - strandat 2309.624 kb on - strandat 2309.654 kb on - strandat 2310.251 kb on - strandat 2310.391 kb on - strandat 2311.073 kb on - strand, within DvMF_1879at 2311.082 kb on + strand, within DvMF_1879at 2311.099 kb on + strand, within DvMF_1879at 2311.099 kb on + strand, within DvMF_1879at 2311.203 kb on - strand, within DvMF_1879at 2311.748 kb on + strand, within DvMF_1879at 2311.748 kb on + strand, within DvMF_1879at 2311.748 kb on + strand, within DvMF_1879at 2311.748 kb on + strand, within DvMF_1879at 2311.748 kb on + strand, within DvMF_1879at 2311.756 kb on - strand, within DvMF_1879at 2311.758 kb on + strand, within DvMF_1879at 2311.789 kb on - strand, within DvMF_1879at 2311.855 kb on + strand, within DvMF_1879at 2311.863 kb on - strand, within DvMF_1879at 2311.922 kb on + strand, within DvMF_1879at 2312.134 kb on + strand, within DvMF_1879at 2312.264 kb on + strand, within DvMF_1879at 2312.339 kb on + strand, within DvMF_1879at 2312.435 kb on + strand, within DvMF_1879at 2312.548 kb on - strandat 2312.629 kb on + strandat 2312.788 kb on - strandat 2312.826 kb on + strandat 2313.012 kb on - strandat 2313.139 kb on - strand, within DvMF_1880at 2313.224 kb on + strand, within DvMF_1880at 2313.376 kb on - strand, within DvMF_1880

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 30C
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2,309,279 + DvMF_1878 0.77 +1.9
2,309,302 + DvMF_1878 0.82 +0.1
2,309,310 - DvMF_1878 0.84 +0.2
2,309,310 - DvMF_1878 0.84 +0.0
2,309,310 - DvMF_1878 0.84 +0.7
2,309,310 - DvMF_1878 0.84 +0.7
2,309,371 + +0.5
2,309,534 - +0.9
2,309,624 - +0.3
2,309,654 - +0.1
2,310,251 - +1.6
2,310,391 - +0.5
2,311,073 - DvMF_1879 0.35 +0.4
2,311,082 + DvMF_1879 0.35 +0.2
2,311,099 + DvMF_1879 0.36 +0.2
2,311,099 + DvMF_1879 0.36 +0.4
2,311,203 - DvMF_1879 0.40 +0.4
2,311,748 + DvMF_1879 0.61 +0.5
2,311,748 + DvMF_1879 0.61 +0.7
2,311,748 + DvMF_1879 0.61 +0.5
2,311,748 + DvMF_1879 0.61 -1.0
2,311,748 + DvMF_1879 0.61 +0.1
2,311,756 - DvMF_1879 0.62 +0.4
2,311,758 + DvMF_1879 0.62 +0.2
2,311,789 - DvMF_1879 0.63 +0.3
2,311,855 + DvMF_1879 0.66 +1.2
2,311,863 - DvMF_1879 0.66 +0.6
2,311,922 + DvMF_1879 0.68 +0.2
2,312,134 + DvMF_1879 0.77 +0.4
2,312,264 + DvMF_1879 0.82 +0.6
2,312,339 + DvMF_1879 0.85 -0.1
2,312,435 + DvMF_1879 0.89 -0.2
2,312,548 - +0.8
2,312,629 + +0.4
2,312,788 - +0.5
2,312,826 + +0.5
2,313,012 - +0.1
2,313,139 - DvMF_1880 0.11 +0.8
2,313,224 + DvMF_1880 0.14 +0.6
2,313,376 - DvMF_1880 0.19 +0.6

Or see this region's nucleotide sequence