Experiment: 10 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1773 and DvMF_1774 are separated by 112 nucleotides DvMF_1774 and DvMF_1775 are separated by 475 nucleotides
DvMF_1773: DvMF_1773 - response regulator receiver sensor signal transduction histidine kinase (RefSeq), at 2,168,456 to 2,169,682
_1773
DvMF_1774: DvMF_1774 - hypothetical protein (RefSeq), at 2,169,795 to 2,170,553
_1774
DvMF_1775: DvMF_1775 - acetate/CoA ligase (RefSeq), at 2,171,029 to 2,173,032
_1775
Position (kb)
2169
2170
2171 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2169.026 kb on + strand, within DvMF_1773 at 2169.080 kb on + strand, within DvMF_1773 at 2169.140 kb on - strand, within DvMF_1773 at 2169.390 kb on + strand, within DvMF_1773 at 2169.390 kb on + strand, within DvMF_1773 at 2169.463 kb on - strand, within DvMF_1773 at 2169.484 kb on - strand, within DvMF_1773 at 2169.484 kb on - strand, within DvMF_1773 at 2169.539 kb on + strand, within DvMF_1773 at 2169.542 kb on - strand, within DvMF_1773 at 2169.552 kb on - strand, within DvMF_1773 at 2169.676 kb on + strand at 2169.694 kb on + strand at 2169.920 kb on + strand, within DvMF_1774 at 2170.047 kb on + strand, within DvMF_1774 at 2170.618 kb on - strand at 2171.091 kb on + strand at 2171.091 kb on + strand at 2171.253 kb on - strand, within DvMF_1775 at 2171.274 kb on + strand, within DvMF_1775 at 2171.524 kb on + strand, within DvMF_1775 at 2171.528 kb on + strand, within DvMF_1775 at 2171.536 kb on - strand, within DvMF_1775
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 30C remove 2,169,026 + DvMF_1773 0.46 +0.4 2,169,080 + DvMF_1773 0.51 +0.5 2,169,140 - DvMF_1773 0.56 +0.4 2,169,390 + DvMF_1773 0.76 +0.7 2,169,390 + DvMF_1773 0.76 +0.4 2,169,463 - DvMF_1773 0.82 +0.3 2,169,484 - DvMF_1773 0.84 +1.0 2,169,484 - DvMF_1773 0.84 +0.5 2,169,539 + DvMF_1773 0.88 +0.5 2,169,542 - DvMF_1773 0.89 +2.3 2,169,552 - DvMF_1773 0.89 +1.7 2,169,676 + +0.3 2,169,694 + +0.6 2,169,920 + DvMF_1774 0.16 +0.8 2,170,047 + DvMF_1774 0.33 +0.3 2,170,618 - +0.4 2,171,091 + -2.7 2,171,091 + -2.5 2,171,253 - DvMF_1775 0.11 -0.9 2,171,274 + DvMF_1775 0.12 -2.6 2,171,524 + DvMF_1775 0.25 -2.3 2,171,528 + DvMF_1775 0.25 -1.6 2,171,536 - DvMF_1775 0.25 -1.8
Or see this region's nucleotide sequence