Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1435

Experiment: 10 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1434 and DvMF_1435 are separated by 284 nucleotidesDvMF_1435 and DvMF_1436 are separated by 304 nucleotides DvMF_1434: DvMF_1434 - DNA-directed DNA polymerase (RefSeq), at 1,755,813 to 1,757,306 _1434 DvMF_1435: DvMF_1435 - peptidase S24 and S26 domain protein (RefSeq), at 1,757,591 to 1,758,043 _1435 DvMF_1436: DvMF_1436 - hypothetical protein (RefSeq), at 1,758,348 to 1,759,229 _1436 Position (kb) 1757 1758 1759Strain fitness (log2 ratio) -1 0 1at 1756.865 kb on + strand, within DvMF_1434at 1756.909 kb on - strand, within DvMF_1434at 1756.909 kb on - strand, within DvMF_1434at 1756.990 kb on + strand, within DvMF_1434at 1756.998 kb on - strand, within DvMF_1434at 1757.068 kb on + strand, within DvMF_1434at 1757.068 kb on + strand, within DvMF_1434at 1757.317 kb on + strandat 1757.567 kb on - strandat 1757.605 kb on + strandat 1757.630 kb on - strandat 1757.834 kb on - strand, within DvMF_1435at 1757.894 kb on + strand, within DvMF_1435at 1758.077 kb on - strandat 1758.077 kb on - strandat 1758.160 kb on + strandat 1758.243 kb on + strandat 1758.274 kb on - strandat 1758.388 kb on + strandat 1758.513 kb on + strand, within DvMF_1436at 1758.622 kb on - strand, within DvMF_1436at 1758.626 kb on - strand, within DvMF_1436at 1758.633 kb on + strand, within DvMF_1436at 1758.641 kb on - strand, within DvMF_1436at 1758.684 kb on - strand, within DvMF_1436at 1758.819 kb on - strand, within DvMF_1436at 1758.835 kb on + strand, within DvMF_1436

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 30C
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1,756,865 + DvMF_1434 0.70 -0.3
1,756,909 - DvMF_1434 0.73 +0.2
1,756,909 - DvMF_1434 0.73 +0.6
1,756,990 + DvMF_1434 0.79 +0.6
1,756,998 - DvMF_1434 0.79 +0.0
1,757,068 + DvMF_1434 0.84 +0.3
1,757,068 + DvMF_1434 0.84 +0.8
1,757,317 + +0.8
1,757,567 - +1.1
1,757,605 + -0.1
1,757,630 - +0.3
1,757,834 - DvMF_1435 0.54 -0.2
1,757,894 + DvMF_1435 0.67 +0.0
1,758,077 - -0.5
1,758,077 - +0.9
1,758,160 + +0.6
1,758,243 + +0.0
1,758,274 - +0.6
1,758,388 + +0.8
1,758,513 + DvMF_1436 0.19 +0.4
1,758,622 - DvMF_1436 0.31 +0.5
1,758,626 - DvMF_1436 0.32 +1.0
1,758,633 + DvMF_1436 0.32 +0.4
1,758,641 - DvMF_1436 0.33 +1.1
1,758,684 - DvMF_1436 0.38 +0.8
1,758,819 - DvMF_1436 0.53 +0.5
1,758,835 + DvMF_1436 0.55 +0.4

Or see this region's nucleotide sequence