Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1230

Experiment: 10 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1229 and DvMF_1230 are separated by 314 nucleotidesDvMF_1230 and DvMF_1231 are separated by 125 nucleotidesDvMF_1231 and DvMF_1232 overlap by 4 nucleotides DvMF_1229: DvMF_1229 - carbon starvation protein CstA (RefSeq), at 1,516,587 to 1,518,005 _1229 DvMF_1230: DvMF_1230 - molybdenum cofactor biosynthesis protein A (RefSeq), at 1,518,320 to 1,519,405 _1230 DvMF_1231: DvMF_1231 - Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein (RefSeq), at 1,519,531 to 1,520,403 _1231 DvMF_1232: DvMF_1232 - formate dehydrogenase accessory protein FdhD, putative (RefSeq), at 1,520,400 to 1,521,224 _1232 Position (kb) 1518 1519 1520Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1517.442 kb on - strand, within DvMF_1229at 1517.458 kb on + strand, within DvMF_1229at 1517.507 kb on + strand, within DvMF_1229at 1517.539 kb on - strand, within DvMF_1229at 1517.766 kb on - strand, within DvMF_1229at 1517.773 kb on + strand, within DvMF_1229at 1517.781 kb on - strand, within DvMF_1229at 1518.270 kb on - strandat 1518.783 kb on - strand, within DvMF_1230at 1519.037 kb on + strand, within DvMF_1230at 1519.039 kb on + strand, within DvMF_1230at 1519.039 kb on + strand, within DvMF_1230at 1519.039 kb on + strand, within DvMF_1230at 1519.039 kb on + strand, within DvMF_1230at 1519.039 kb on + strand, within DvMF_1230at 1519.039 kb on + strand, within DvMF_1230at 1519.039 kb on + strand, within DvMF_1230at 1519.047 kb on - strand, within DvMF_1230at 1519.047 kb on - strand, within DvMF_1230at 1519.244 kb on + strand, within DvMF_1230at 1519.284 kb on - strand, within DvMF_1230at 1519.302 kb on - strandat 1519.855 kb on + strand, within DvMF_1231at 1519.999 kb on + strand, within DvMF_1231at 1520.331 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 30C
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1,517,442 - DvMF_1229 0.60 -0.8
1,517,458 + DvMF_1229 0.61 +0.5
1,517,507 + DvMF_1229 0.65 -0.6
1,517,539 - DvMF_1229 0.67 -0.3
1,517,766 - DvMF_1229 0.83 +0.1
1,517,773 + DvMF_1229 0.84 +0.2
1,517,781 - DvMF_1229 0.84 -0.4
1,518,270 - +0.7
1,518,783 - DvMF_1230 0.43 -4.5
1,519,037 + DvMF_1230 0.66 -4.8
1,519,039 + DvMF_1230 0.66 -2.7
1,519,039 + DvMF_1230 0.66 -1.7
1,519,039 + DvMF_1230 0.66 -3.8
1,519,039 + DvMF_1230 0.66 -5.3
1,519,039 + DvMF_1230 0.66 -3.2
1,519,039 + DvMF_1230 0.66 -0.4
1,519,039 + DvMF_1230 0.66 -3.2
1,519,047 - DvMF_1230 0.67 -3.2
1,519,047 - DvMF_1230 0.67 -1.9
1,519,244 + DvMF_1230 0.85 -2.4
1,519,284 - DvMF_1230 0.89 -3.9
1,519,302 - -1.8
1,519,855 + DvMF_1231 0.37 -3.9
1,519,999 + DvMF_1231 0.54 -1.9
1,520,331 - +0.6

Or see this region's nucleotide sequence