Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1204

Experiment: 10 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1203 and DvMF_1204 are separated by 210 nucleotidesDvMF_1204 and DvMF_1205 are separated by 178 nucleotides DvMF_1203: DvMF_1203 - protein of unknown function DUF81 (RefSeq), at 1,481,969 to 1,482,766 _1203 DvMF_1204: DvMF_1204 - FMN-dependent alpha-hydroxy acid dehydrogenase (RefSeq), at 1,482,977 to 1,483,996 _1204 DvMF_1205: DvMF_1205 - GntR domain protein (RefSeq), at 1,484,175 to 1,484,891 _1205 Position (kb) 1482 1483 1484Strain fitness (log2 ratio) -2 -1 0 1 2at 1482.003 kb on + strandat 1482.160 kb on - strand, within DvMF_1203at 1482.177 kb on + strand, within DvMF_1203at 1482.260 kb on - strand, within DvMF_1203at 1482.383 kb on - strand, within DvMF_1203at 1482.477 kb on + strand, within DvMF_1203at 1482.546 kb on + strand, within DvMF_1203at 1482.546 kb on + strand, within DvMF_1203at 1482.806 kb on - strandat 1483.045 kb on - strandat 1483.316 kb on + strand, within DvMF_1204at 1483.383 kb on + strand, within DvMF_1204at 1483.391 kb on - strand, within DvMF_1204at 1483.473 kb on + strand, within DvMF_1204at 1483.758 kb on + strand, within DvMF_1204at 1483.763 kb on + strand, within DvMF_1204at 1483.766 kb on - strand, within DvMF_1204at 1483.812 kb on - strand, within DvMF_1204at 1483.945 kb on + strandat 1484.387 kb on - strand, within DvMF_1205at 1484.490 kb on + strand, within DvMF_1205at 1484.498 kb on - strand, within DvMF_1205at 1484.956 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 30C
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1,482,003 + +1.2
1,482,160 - DvMF_1203 0.24 +0.4
1,482,177 + DvMF_1203 0.26 +0.7
1,482,260 - DvMF_1203 0.36 +0.2
1,482,383 - DvMF_1203 0.52 +1.2
1,482,477 + DvMF_1203 0.64 +0.3
1,482,546 + DvMF_1203 0.72 +0.4
1,482,546 + DvMF_1203 0.72 +0.1
1,482,806 - +1.9
1,483,045 - -1.2
1,483,316 + DvMF_1204 0.33 -2.5
1,483,383 + DvMF_1204 0.40 -2.2
1,483,391 - DvMF_1204 0.41 -1.5
1,483,473 + DvMF_1204 0.49 +0.2
1,483,758 + DvMF_1204 0.77 +0.9
1,483,763 + DvMF_1204 0.77 -1.8
1,483,766 - DvMF_1204 0.77 -1.4
1,483,812 - DvMF_1204 0.82 -1.2
1,483,945 + -1.2
1,484,387 - DvMF_1205 0.30 +0.5
1,484,490 + DvMF_1205 0.44 +0.4
1,484,498 - DvMF_1205 0.45 +1.0
1,484,956 + +0.9

Or see this region's nucleotide sequence