Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0830

Experiment: 10 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0829 and DvMF_0830 are separated by 430 nucleotidesDvMF_0830 and DvMF_0831 are separated by 236 nucleotides DvMF_0829: DvMF_0829 - alpha/beta hydrolase fold protein (RefSeq), at 1,000,881 to 1,001,873 _0829 DvMF_0830: DvMF_0830 - HI0933 family protein (RefSeq), at 1,002,304 to 1,003,563 _0830 DvMF_0831: DvMF_0831 - protein of unknown function DUF21 (RefSeq), at 1,003,800 to 1,005,158 _0831 Position (kb) 1002 1003 1004Strain fitness (log2 ratio) -1 0 1at 1001.630 kb on - strand, within DvMF_0829at 1001.636 kb on - strand, within DvMF_0829at 1002.078 kb on - strandat 1002.285 kb on + strandat 1002.754 kb on - strand, within DvMF_0830at 1002.913 kb on + strand, within DvMF_0830at 1002.985 kb on + strand, within DvMF_0830at 1002.993 kb on - strand, within DvMF_0830at 1003.000 kb on + strand, within DvMF_0830at 1003.113 kb on - strand, within DvMF_0830at 1003.147 kb on + strand, within DvMF_0830at 1003.324 kb on + strand, within DvMF_0830at 1003.329 kb on + strand, within DvMF_0830at 1003.362 kb on - strand, within DvMF_0830at 1003.459 kb on + strandat 1003.477 kb on - strandat 1003.796 kb on - strandat 1003.863 kb on - strandat 1003.965 kb on + strand, within DvMF_0831at 1003.997 kb on + strand, within DvMF_0831at 1003.997 kb on + strand, within DvMF_0831at 1004.005 kb on - strand, within DvMF_0831at 1004.085 kb on + strand, within DvMF_0831at 1004.210 kb on - strand, within DvMF_0831at 1004.212 kb on + strand, within DvMF_0831at 1004.212 kb on + strand, within DvMF_0831at 1004.233 kb on + strand, within DvMF_0831at 1004.505 kb on + strand, within DvMF_0831

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 30C
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1,001,630 - DvMF_0829 0.75 +0.4
1,001,636 - DvMF_0829 0.76 +0.5
1,002,078 - +0.3
1,002,285 + +0.9
1,002,754 - DvMF_0830 0.36 +0.8
1,002,913 + DvMF_0830 0.48 +0.4
1,002,985 + DvMF_0830 0.54 +0.4
1,002,993 - DvMF_0830 0.55 +0.2
1,003,000 + DvMF_0830 0.55 -0.5
1,003,113 - DvMF_0830 0.64 +0.7
1,003,147 + DvMF_0830 0.67 +0.4
1,003,324 + DvMF_0830 0.81 +0.2
1,003,329 + DvMF_0830 0.81 +0.2
1,003,362 - DvMF_0830 0.84 -0.2
1,003,459 + +0.0
1,003,477 - +0.1
1,003,796 - +0.5
1,003,863 - +0.4
1,003,965 + DvMF_0831 0.12 +0.4
1,003,997 + DvMF_0831 0.14 +0.4
1,003,997 + DvMF_0831 0.14 +0.2
1,004,005 - DvMF_0831 0.15 +0.6
1,004,085 + DvMF_0831 0.21 +0.6
1,004,210 - DvMF_0831 0.30 -0.5
1,004,212 + DvMF_0831 0.30 +0.6
1,004,212 + DvMF_0831 0.30 -0.1
1,004,233 + DvMF_0831 0.32 +0.5
1,004,505 + DvMF_0831 0.52 +0.5

Or see this region's nucleotide sequence