Experiment: 10 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0802 and DvMF_0803 are separated by 3 nucleotides DvMF_0803 and DvMF_0804 are separated by 318 nucleotides
DvMF_0802: DvMF_0802 - ABC transporter related (RefSeq), at 966,101 to 967,405
_0802
DvMF_0803: DvMF_0803 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 967,409 to 969,139
_0803
DvMF_0804: DvMF_0804 - UspA domain protein (RefSeq), at 969,458 to 969,874
_0804
Position (kb) 967
968
969
970 Strain fitness (log2 ratio) -1
0
1 at 966.561 kb on - strand, within DvMF_0802 at 966.786 kb on + strand, within DvMF_0802 at 966.810 kb on - strand, within DvMF_0802 at 967.030 kb on + strand, within DvMF_0802 at 967.030 kb on + strand, within DvMF_0802 at 967.038 kb on - strand, within DvMF_0802 at 967.048 kb on + strand, within DvMF_0802 at 967.056 kb on - strand, within DvMF_0802 at 967.139 kb on - strand, within DvMF_0802 at 967.156 kb on - strand, within DvMF_0802 at 967.181 kb on - strand, within DvMF_0802 at 967.205 kb on - strand, within DvMF_0802 at 967.210 kb on - strand, within DvMF_0802 at 967.343 kb on - strand at 967.377 kb on - strand at 967.681 kb on + strand, within DvMF_0803 at 967.694 kb on + strand, within DvMF_0803 at 967.735 kb on + strand, within DvMF_0803 at 967.735 kb on + strand, within DvMF_0803 at 967.743 kb on - strand, within DvMF_0803 at 967.868 kb on - strand, within DvMF_0803 at 967.917 kb on + strand, within DvMF_0803 at 967.933 kb on - strand, within DvMF_0803 at 967.982 kb on - strand, within DvMF_0803 at 968.119 kb on - strand, within DvMF_0803 at 968.164 kb on + strand, within DvMF_0803 at 968.251 kb on - strand, within DvMF_0803 at 968.360 kb on - strand, within DvMF_0803 at 968.379 kb on + strand, within DvMF_0803 at 968.444 kb on - strand, within DvMF_0803 at 968.461 kb on + strand, within DvMF_0803 at 968.594 kb on + strand, within DvMF_0803 at 968.768 kb on - strand, within DvMF_0803 at 968.985 kb on - strand at 969.350 kb on - strand at 969.423 kb on + strand at 969.544 kb on + strand, within DvMF_0804 at 969.651 kb on + strand, within DvMF_0804 at 969.651 kb on + strand, within DvMF_0804 at 969.710 kb on - strand, within DvMF_0804 at 969.710 kb on - strand, within DvMF_0804 at 969.769 kb on + strand, within DvMF_0804 at 969.777 kb on - strand, within DvMF_0804 at 969.816 kb on + strand, within DvMF_0804 at 969.816 kb on + strand, within DvMF_0804 at 969.822 kb on + strand, within DvMF_0804
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 30C remove 966,561 - DvMF_0802 0.35 +0.4 966,786 + DvMF_0802 0.52 +1.1 966,810 - DvMF_0802 0.54 +0.6 967,030 + DvMF_0802 0.71 +1.0 967,030 + DvMF_0802 0.71 +0.2 967,038 - DvMF_0802 0.72 +0.6 967,048 + DvMF_0802 0.73 +1.0 967,056 - DvMF_0802 0.73 +1.0 967,139 - DvMF_0802 0.80 -0.3 967,156 - DvMF_0802 0.81 -0.6 967,181 - DvMF_0802 0.83 +0.4 967,205 - DvMF_0802 0.85 +0.6 967,210 - DvMF_0802 0.85 +0.4 967,343 - +0.3 967,377 - -0.2 967,681 + DvMF_0803 0.16 +0.6 967,694 + DvMF_0803 0.16 +0.5 967,735 + DvMF_0803 0.19 +0.9 967,735 + DvMF_0803 0.19 +0.4 967,743 - DvMF_0803 0.19 +0.3 967,868 - DvMF_0803 0.27 +0.3 967,917 + DvMF_0803 0.29 +1.1 967,933 - DvMF_0803 0.30 +0.4 967,982 - DvMF_0803 0.33 +1.0 968,119 - DvMF_0803 0.41 +0.9 968,164 + DvMF_0803 0.44 +0.7 968,251 - DvMF_0803 0.49 -0.2 968,360 - DvMF_0803 0.55 +0.9 968,379 + DvMF_0803 0.56 +0.3 968,444 - DvMF_0803 0.60 +0.5 968,461 + DvMF_0803 0.61 +0.3 968,594 + DvMF_0803 0.68 +0.4 968,768 - DvMF_0803 0.79 +0.4 968,985 - +0.9 969,350 - +0.2 969,423 + +0.5 969,544 + DvMF_0804 0.21 +1.3 969,651 + DvMF_0804 0.46 +0.7 969,651 + DvMF_0804 0.46 +0.5 969,710 - DvMF_0804 0.60 +1.1 969,710 - DvMF_0804 0.60 +0.6 969,769 + DvMF_0804 0.75 +0.4 969,777 - DvMF_0804 0.76 -0.5 969,816 + DvMF_0804 0.86 +0.7 969,816 + DvMF_0804 0.86 +0.2 969,822 + DvMF_0804 0.87 +1.6
Or see this region's nucleotide sequence