Experiment: 10 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0625 and DvMF_0626 are separated by 77 nucleotides DvMF_0626 and DvMF_0627 are separated by 464 nucleotides DvMF_0627 and DvMF_0628 are separated by 598 nucleotides
DvMF_0625: DvMF_0625 - protein of unknown function DUF1641 (RefSeq), at 747,311 to 748,012
_0625
DvMF_0626: DvMF_0626 - response regulator receiver protein (RefSeq), at 748,090 to 748,476
_0626
DvMF_0627: DvMF_0627 - Sel1 domain protein repeat-containing protein (RefSeq), at 748,941 to 749,627
_0627
DvMF_0628: DvMF_0628 - protein of unknown function DUF214 (RefSeq), at 750,226 to 751,401
_0628
Position (kb) 748
749
750 Strain fitness (log2 ratio) -1
0
1
2 at 748.190 kb on + strand, within DvMF_0626 at 748.302 kb on + strand, within DvMF_0626 at 748.333 kb on - strand, within DvMF_0626 at 748.333 kb on - strand, within DvMF_0626 at 748.333 kb on - strand, within DvMF_0626 at 748.372 kb on - strand, within DvMF_0626 at 748.470 kb on + strand at 748.523 kb on + strand at 748.602 kb on + strand at 748.602 kb on + strand at 748.610 kb on - strand at 748.754 kb on + strand at 749.167 kb on + strand, within DvMF_0627 at 749.173 kb on + strand, within DvMF_0627 at 749.258 kb on + strand, within DvMF_0627 at 749.353 kb on - strand, within DvMF_0627 at 749.442 kb on + strand, within DvMF_0627 at 749.684 kb on - strand at 749.844 kb on + strand at 750.356 kb on - strand, within DvMF_0628 at 750.435 kb on - strand, within DvMF_0628 at 750.617 kb on + strand, within DvMF_0628
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 30C remove 748,190 + DvMF_0626 0.26 +0.3 748,302 + DvMF_0626 0.55 +0.1 748,333 - DvMF_0626 0.63 +0.9 748,333 - DvMF_0626 0.63 +0.9 748,333 - DvMF_0626 0.63 +0.5 748,372 - DvMF_0626 0.73 -0.2 748,470 + +0.4 748,523 + +0.2 748,602 + +0.5 748,602 + +0.4 748,610 - +0.4 748,754 + +1.9 749,167 + DvMF_0627 0.33 +1.0 749,173 + DvMF_0627 0.34 +0.7 749,258 + DvMF_0627 0.46 +0.9 749,353 - DvMF_0627 0.60 +1.0 749,442 + DvMF_0627 0.73 +1.8 749,684 - +0.1 749,844 + -0.2 750,356 - DvMF_0628 0.11 +0.4 750,435 - DvMF_0628 0.18 +0.4 750,617 + DvMF_0628 0.33 -0.2
Or see this region's nucleotide sequence