Experiment: m.b. D-Cycloserine 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3024 and Dshi_3025 are separated by 106 nucleotides Dshi_3025 and Dshi_3026 are separated by 55 nucleotides Dshi_3026 and Dshi_3027 are separated by 62 nucleotides Dshi_3027 and Dshi_3028 are separated by 4 nucleotides
Dshi_3024: Dshi_3024 - transcriptional regulator, AraC family (RefSeq), at 3,194,067 to 3,194,930
_3024
Dshi_3025: Dshi_3025 - OmpA/MotB domain protein (RefSeq), at 3,195,037 to 3,195,663
_3025
Dshi_3026: Dshi_3026 - GntR domain protein (RefSeq), at 3,195,719 to 3,196,486
_3026
Dshi_3027: Dshi_3027 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 3,196,549 to 3,197,109
_3027
Dshi_3028: Dshi_3028 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 3,197,114 to 3,197,638
_3028
Position (kb)
3195
3196
3197 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3194.756 kb on + strand, within Dshi_3024 at 3194.756 kb on + strand, within Dshi_3024 at 3194.764 kb on - strand, within Dshi_3024 at 3194.897 kb on - strand at 3194.921 kb on + strand at 3195.035 kb on - strand at 3195.054 kb on - strand at 3195.321 kb on + strand, within Dshi_3025 at 3195.352 kb on + strand, within Dshi_3025 at 3195.357 kb on + strand, within Dshi_3025 at 3195.444 kb on - strand, within Dshi_3025 at 3195.478 kb on - strand, within Dshi_3025 at 3195.803 kb on - strand, within Dshi_3026 at 3195.903 kb on - strand, within Dshi_3026 at 3196.064 kb on + strand, within Dshi_3026 at 3196.495 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.048 mg/ml remove 3,194,756 + Dshi_3024 0.80 -0.5 3,194,756 + Dshi_3024 0.80 +0.4 3,194,764 - Dshi_3024 0.81 -0.1 3,194,897 - +0.1 3,194,921 + -1.9 3,195,035 - -2.5 3,195,054 - -0.3 3,195,321 + Dshi_3025 0.45 -0.3 3,195,352 + Dshi_3025 0.50 -1.3 3,195,357 + Dshi_3025 0.51 -0.6 3,195,444 - Dshi_3025 0.65 +0.2 3,195,478 - Dshi_3025 0.70 -0.3 3,195,803 - Dshi_3026 0.11 -1.0 3,195,903 - Dshi_3026 0.24 +3.5 3,196,064 + Dshi_3026 0.45 -1.4 3,196,495 - +0.6
Or see this region's nucleotide sequence