Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1424

Experiment: m.b. D-Cycloserine 0.048 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1422 and Dshi_1423 overlap by 1 nucleotidesDshi_1423 and Dshi_1424 overlap by 1 nucleotidesDshi_1424 and Dshi_1425 are separated by 18 nucleotides Dshi_1422: Dshi_1422 - ABC transporter related (RefSeq), at 1,474,762 to 1,476,309 _1422 Dshi_1423: Dshi_1423 - inner-membrane translocator (RefSeq), at 1,476,309 to 1,477,271 _1423 Dshi_1424: Dshi_1424 - inner-membrane translocator (RefSeq), at 1,477,271 to 1,478,302 _1424 Dshi_1425: Dshi_1425 - aldehyde dehydrogenase (RefSeq), at 1,478,321 to 1,479,775 _1425 Position (kb) 1477 1478 1479Strain fitness (log2 ratio) -1 0 1at 1476.403 kb on + strandat 1476.403 kb on + strandat 1476.412 kb on + strand, within Dshi_1423at 1476.412 kb on + strand, within Dshi_1423at 1476.501 kb on + strand, within Dshi_1423at 1476.501 kb on + strand, within Dshi_1423at 1476.677 kb on - strand, within Dshi_1423at 1476.809 kb on - strand, within Dshi_1423at 1476.816 kb on + strand, within Dshi_1423at 1476.900 kb on + strand, within Dshi_1423at 1476.900 kb on + strand, within Dshi_1423at 1476.900 kb on + strand, within Dshi_1423at 1476.900 kb on + strand, within Dshi_1423at 1476.900 kb on + strand, within Dshi_1423at 1476.900 kb on + strand, within Dshi_1423at 1476.900 kb on + strand, within Dshi_1423at 1476.908 kb on - strand, within Dshi_1423at 1476.908 kb on - strand, within Dshi_1423at 1476.908 kb on - strand, within Dshi_1423at 1476.908 kb on - strand, within Dshi_1423at 1477.228 kb on + strandat 1477.387 kb on + strand, within Dshi_1424at 1477.583 kb on - strand, within Dshi_1424at 1477.600 kb on - strand, within Dshi_1424at 1477.697 kb on - strand, within Dshi_1424at 1477.702 kb on - strand, within Dshi_1424at 1477.767 kb on + strand, within Dshi_1424at 1477.817 kb on + strand, within Dshi_1424at 1477.852 kb on - strand, within Dshi_1424at 1477.871 kb on + strand, within Dshi_1424at 1477.871 kb on + strand, within Dshi_1424at 1477.971 kb on + strand, within Dshi_1424at 1478.029 kb on + strand, within Dshi_1424at 1478.068 kb on - strand, within Dshi_1424at 1478.078 kb on - strand, within Dshi_1424at 1478.162 kb on + strand, within Dshi_1424at 1478.204 kb on + strandat 1478.204 kb on + strandat 1478.204 kb on + strandat 1478.212 kb on - strandat 1478.212 kb on - strandat 1478.217 kb on - strandat 1478.217 kb on - strandat 1478.494 kb on + strand, within Dshi_1425at 1478.617 kb on + strand, within Dshi_1425at 1478.632 kb on + strand, within Dshi_1425at 1478.768 kb on + strand, within Dshi_1425at 1478.774 kb on + strand, within Dshi_1425at 1478.776 kb on - strand, within Dshi_1425at 1478.776 kb on - strand, within Dshi_1425at 1478.878 kb on + strand, within Dshi_1425at 1478.886 kb on - strand, within Dshi_1425at 1478.898 kb on - strand, within Dshi_1425at 1478.972 kb on + strand, within Dshi_1425at 1479.047 kb on + strand, within Dshi_1425at 1479.072 kb on - strand, within Dshi_1425at 1479.160 kb on - strand, within Dshi_1425at 1479.165 kb on - strand, within Dshi_1425at 1479.175 kb on - strand, within Dshi_1425at 1479.223 kb on - strand, within Dshi_1425at 1479.266 kb on + strand, within Dshi_1425at 1479.301 kb on - strand, within Dshi_1425

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.048 mg/ml
remove
1,476,403 + -0.4
1,476,403 + -0.7
1,476,412 + Dshi_1423 0.11 +0.3
1,476,412 + Dshi_1423 0.11 +0.1
1,476,501 + Dshi_1423 0.20 -0.4
1,476,501 + Dshi_1423 0.20 -0.8
1,476,677 - Dshi_1423 0.38 +0.2
1,476,809 - Dshi_1423 0.52 +0.4
1,476,816 + Dshi_1423 0.53 +0.0
1,476,900 + Dshi_1423 0.61 +0.1
1,476,900 + Dshi_1423 0.61 +1.2
1,476,900 + Dshi_1423 0.61 +0.3
1,476,900 + Dshi_1423 0.61 -0.9
1,476,900 + Dshi_1423 0.61 -0.1
1,476,900 + Dshi_1423 0.61 -0.4
1,476,900 + Dshi_1423 0.61 +0.3
1,476,908 - Dshi_1423 0.62 -0.7
1,476,908 - Dshi_1423 0.62 -1.1
1,476,908 - Dshi_1423 0.62 -0.3
1,476,908 - Dshi_1423 0.62 -0.1
1,477,228 + -0.0
1,477,387 + Dshi_1424 0.11 +0.6
1,477,583 - Dshi_1424 0.30 +0.1
1,477,600 - Dshi_1424 0.32 +1.0
1,477,697 - Dshi_1424 0.41 -0.5
1,477,702 - Dshi_1424 0.42 +0.8
1,477,767 + Dshi_1424 0.48 -1.0
1,477,817 + Dshi_1424 0.53 +0.1
1,477,852 - Dshi_1424 0.56 -0.6
1,477,871 + Dshi_1424 0.58 -0.1
1,477,871 + Dshi_1424 0.58 +0.1
1,477,971 + Dshi_1424 0.68 +0.1
1,478,029 + Dshi_1424 0.73 +0.1
1,478,068 - Dshi_1424 0.77 +0.2
1,478,078 - Dshi_1424 0.78 -0.2
1,478,162 + Dshi_1424 0.86 -0.4
1,478,204 + -1.3
1,478,204 + -0.4
1,478,204 + +0.3
1,478,212 - -0.0
1,478,212 - -0.5
1,478,217 - +0.5
1,478,217 - -0.1
1,478,494 + Dshi_1425 0.12 +0.5
1,478,617 + Dshi_1425 0.20 -0.3
1,478,632 + Dshi_1425 0.21 -0.5
1,478,768 + Dshi_1425 0.31 +0.9
1,478,774 + Dshi_1425 0.31 +1.1
1,478,776 - Dshi_1425 0.31 -0.8
1,478,776 - Dshi_1425 0.31 -0.4
1,478,878 + Dshi_1425 0.38 +0.8
1,478,886 - Dshi_1425 0.39 +0.5
1,478,898 - Dshi_1425 0.40 -0.3
1,478,972 + Dshi_1425 0.45 -0.4
1,479,047 + Dshi_1425 0.50 +0.2
1,479,072 - Dshi_1425 0.52 +1.1
1,479,160 - Dshi_1425 0.58 +0.3
1,479,165 - Dshi_1425 0.58 +0.4
1,479,175 - Dshi_1425 0.59 -0.8
1,479,223 - Dshi_1425 0.62 -0.1
1,479,266 + Dshi_1425 0.65 -0.1
1,479,301 - Dshi_1425 0.67 +1.1

Or see this region's nucleotide sequence