Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1372
Experiment: m.b. D-Cycloserine 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. D-Cycloserine 0.048 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,424,297 | - | -0.1 | |||
1,424,469 | + | Dshi_1371 | 0.25 | -0.1 | |
1,424,648 | - | Dshi_1371 | 0.43 | -1.6 | |
1,424,737 | + | Dshi_1371 | 0.52 | -1.3 | |
1,424,770 | + | Dshi_1371 | 0.55 | +0.1 | |
1,424,857 | + | Dshi_1371 | 0.64 | -1.0 | |
1,424,976 | - | Dshi_1371 | 0.76 | +0.6 | |
1,425,123 | + | -0.3 | |||
1,425,244 | - | -1.6 | |||
1,425,318 | - | -0.5 | |||
1,425,325 | + | Dshi_1372 | 0.10 | -0.2 | |
1,425,631 | - | Dshi_1372 | 0.43 | -0.0 | |
1,425,827 | - | Dshi_1372 | 0.65 | -0.1 | |
1,425,841 | - | Dshi_1372 | 0.66 | -2.1 | |
1,425,852 | + | Dshi_1372 | 0.67 | -0.4 | |
1,425,860 | - | Dshi_1372 | 0.68 | -0.7 | |
1,426,040 | + | Dshi_1372 | 0.88 | -0.0 | |
1,426,368 | + | Dshi_1373 | 0.24 | -0.1 | |
1,426,376 | - | Dshi_1373 | 0.25 | -0.1 | |
1,426,515 | - | Dshi_1373 | 0.40 | -0.9 | |
1,426,698 | - | Dshi_1373 | 0.60 | -0.1 | |
1,426,721 | + | Dshi_1373 | 0.63 | +0.2 | |
1,426,797 | + | Dshi_1373 | 0.71 | +0.9 | |
1,426,844 | + | Dshi_1373 | 0.76 | +0.0 | |
1,426,849 | + | Dshi_1373 | 0.77 | +1.3 | |
1,426,875 | + | Dshi_1373 | 0.80 | -0.6 | |
1,426,967 | - | -0.5 | |||
1,427,034 | + | -0.3 | |||
1,427,124 | + | -1.0 | |||
1,427,148 | + | -1.0 |
Or see this region's nucleotide sequence