Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1369

Experiment: m.b. D-Cycloserine 0.048 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1367 and Dshi_1368 are separated by 30 nucleotidesDshi_1368 and Dshi_1369 are separated by 16 nucleotidesDshi_1369 and Dshi_1370 are separated by 46 nucleotides Dshi_1367: Dshi_1367 - amidase, hydantoinase/carbamoylase family (RefSeq), at 1,420,347 to 1,421,621 _1367 Dshi_1368: Dshi_1368 - hypothetical protein (RefSeq), at 1,421,652 to 1,421,951 _1368 Dshi_1369: Dshi_1369 - class II aldolase/adducin family protein (RefSeq), at 1,421,968 to 1,422,711 _1369 Dshi_1370: Dshi_1370 - dihydropyrimidinase (RefSeq), at 1,422,758 to 1,424,209 _1370 Position (kb) 1421 1422 1423Strain fitness (log2 ratio) -2 -1 0 1 2at 1420.971 kb on - strand, within Dshi_1367at 1420.971 kb on - strand, within Dshi_1367at 1420.991 kb on - strand, within Dshi_1367at 1421.065 kb on + strand, within Dshi_1367at 1421.153 kb on + strand, within Dshi_1367at 1421.269 kb on + strand, within Dshi_1367at 1421.309 kb on - strand, within Dshi_1367at 1421.376 kb on - strand, within Dshi_1367at 1421.406 kb on + strand, within Dshi_1367at 1421.485 kb on - strand, within Dshi_1367at 1421.485 kb on - strand, within Dshi_1367at 1421.525 kb on - strandat 1421.574 kb on + strandat 1421.590 kb on - strandat 1421.590 kb on - strandat 1421.590 kb on - strandat 1421.767 kb on - strand, within Dshi_1368at 1421.819 kb on + strand, within Dshi_1368at 1421.979 kb on + strandat 1422.372 kb on + strand, within Dshi_1369at 1422.491 kb on + strand, within Dshi_1369at 1422.632 kb on + strand, within Dshi_1369at 1423.033 kb on + strand, within Dshi_1370at 1423.046 kb on - strand, within Dshi_1370at 1423.062 kb on - strand, within Dshi_1370at 1423.218 kb on + strand, within Dshi_1370at 1423.374 kb on + strand, within Dshi_1370at 1423.386 kb on + strand, within Dshi_1370at 1423.440 kb on - strand, within Dshi_1370at 1423.519 kb on + strand, within Dshi_1370at 1423.527 kb on - strand, within Dshi_1370at 1423.634 kb on + strand, within Dshi_1370at 1423.641 kb on - strand, within Dshi_1370at 1423.642 kb on - strand, within Dshi_1370at 1423.655 kb on + strand, within Dshi_1370

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.048 mg/ml
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1,420,971 - Dshi_1367 0.49 +0.6
1,420,971 - Dshi_1367 0.49 +1.0
1,420,991 - Dshi_1367 0.51 -0.8
1,421,065 + Dshi_1367 0.56 -1.5
1,421,153 + Dshi_1367 0.63 -0.4
1,421,269 + Dshi_1367 0.72 -1.8
1,421,309 - Dshi_1367 0.75 -0.6
1,421,376 - Dshi_1367 0.81 -0.0
1,421,406 + Dshi_1367 0.83 -0.2
1,421,485 - Dshi_1367 0.89 -0.9
1,421,485 - Dshi_1367 0.89 -0.6
1,421,525 - -0.6
1,421,574 + -1.0
1,421,590 - -2.1
1,421,590 - -2.1
1,421,590 - -1.1
1,421,767 - Dshi_1368 0.38 -1.4
1,421,819 + Dshi_1368 0.56 -0.4
1,421,979 + -1.0
1,422,372 + Dshi_1369 0.54 -0.3
1,422,491 + Dshi_1369 0.70 -1.1
1,422,632 + Dshi_1369 0.89 -0.2
1,423,033 + Dshi_1370 0.19 -1.9
1,423,046 - Dshi_1370 0.20 -0.9
1,423,062 - Dshi_1370 0.21 -0.2
1,423,218 + Dshi_1370 0.32 -1.2
1,423,374 + Dshi_1370 0.42 -0.5
1,423,386 + Dshi_1370 0.43 -0.9
1,423,440 - Dshi_1370 0.47 -0.8
1,423,519 + Dshi_1370 0.52 +2.4
1,423,527 - Dshi_1370 0.53 -0.6
1,423,634 + Dshi_1370 0.60 -1.9
1,423,641 - Dshi_1370 0.61 -1.2
1,423,642 - Dshi_1370 0.61 -1.4
1,423,655 + Dshi_1370 0.62 -0.8

Or see this region's nucleotide sequence