Experiment: m.b. D-Cycloserine 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1362 and Dshi_1363 are separated by 27 nucleotides Dshi_1363 and Dshi_1364 are separated by 13 nucleotides Dshi_1364 and Dshi_1365 are separated by 77 nucleotides
Dshi_1362: Dshi_1362 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 1,414,985 to 1,416,322
_1362
Dshi_1363: Dshi_1363 - Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) , at 1,416,350 to 1,417,648
_1363
Dshi_1364: Dshi_1364 - hypothetical protein (RefSeq), at 1,417,662 to 1,418,054
_1364
Dshi_1365: Dshi_1365 - transcriptional regulator, TetR family (RefSeq), at 1,418,132 to 1,418,767
_1365
Position (kb)
1416
1417
1418 Strain fitness (log2 ratio)
-2
-1
0
1 at 1415.444 kb on + strand, within Dshi_1362 at 1415.444 kb on + strand, within Dshi_1362 at 1415.452 kb on - strand, within Dshi_1362 at 1415.452 kb on - strand, within Dshi_1362 at 1415.492 kb on - strand, within Dshi_1362 at 1415.844 kb on - strand, within Dshi_1362 at 1415.945 kb on - strand, within Dshi_1362 at 1415.975 kb on - strand, within Dshi_1362 at 1416.032 kb on + strand, within Dshi_1362 at 1416.150 kb on + strand, within Dshi_1362 at 1416.243 kb on + strand at 1416.305 kb on + strand at 1416.351 kb on + strand at 1416.387 kb on + strand at 1416.498 kb on + strand, within Dshi_1363 at 1416.681 kb on - strand, within Dshi_1363 at 1416.840 kb on + strand, within Dshi_1363 at 1416.986 kb on - strand, within Dshi_1363 at 1417.026 kb on + strand, within Dshi_1363 at 1417.195 kb on + strand, within Dshi_1363 at 1417.195 kb on + strand, within Dshi_1363 at 1417.203 kb on - strand, within Dshi_1363 at 1417.203 kb on - strand, within Dshi_1363 at 1417.205 kb on + strand, within Dshi_1363 at 1417.277 kb on + strand, within Dshi_1363 at 1417.407 kb on - strand, within Dshi_1363 at 1417.407 kb on - strand, within Dshi_1363 at 1417.517 kb on + strand, within Dshi_1363 at 1417.673 kb on + strand at 1417.832 kb on - strand, within Dshi_1364 at 1417.932 kb on - strand, within Dshi_1364 at 1418.130 kb on + strand at 1418.130 kb on + strand at 1418.198 kb on + strand, within Dshi_1365 at 1418.244 kb on + strand, within Dshi_1365 at 1418.252 kb on - strand, within Dshi_1365 at 1418.291 kb on + strand, within Dshi_1365 at 1418.311 kb on - strand, within Dshi_1365 at 1418.312 kb on - strand, within Dshi_1365 at 1418.537 kb on + strand, within Dshi_1365 at 1418.561 kb on - strand, within Dshi_1365 at 1418.620 kb on - strand, within Dshi_1365
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.048 mg/ml remove 1,415,444 + Dshi_1362 0.34 -1.1 1,415,444 + Dshi_1362 0.34 +0.4 1,415,452 - Dshi_1362 0.35 -0.6 1,415,452 - Dshi_1362 0.35 -0.4 1,415,492 - Dshi_1362 0.38 -1.5 1,415,844 - Dshi_1362 0.64 +0.8 1,415,945 - Dshi_1362 0.72 -0.9 1,415,975 - Dshi_1362 0.74 -0.5 1,416,032 + Dshi_1362 0.78 -0.7 1,416,150 + Dshi_1362 0.87 -0.4 1,416,243 + -0.4 1,416,305 + +0.4 1,416,351 + +0.8 1,416,387 + -0.7 1,416,498 + Dshi_1363 0.11 +0.2 1,416,681 - Dshi_1363 0.25 -1.6 1,416,840 + Dshi_1363 0.38 -2.1 1,416,986 - Dshi_1363 0.49 +0.0 1,417,026 + Dshi_1363 0.52 -1.3 1,417,195 + Dshi_1363 0.65 -1.5 1,417,195 + Dshi_1363 0.65 -0.1 1,417,203 - Dshi_1363 0.66 -0.6 1,417,203 - Dshi_1363 0.66 -0.3 1,417,205 + Dshi_1363 0.66 +0.7 1,417,277 + Dshi_1363 0.71 -0.3 1,417,407 - Dshi_1363 0.81 -0.2 1,417,407 - Dshi_1363 0.81 -1.1 1,417,517 + Dshi_1363 0.90 -0.9 1,417,673 + -0.6 1,417,832 - Dshi_1364 0.43 -1.0 1,417,932 - Dshi_1364 0.69 +0.4 1,418,130 + +0.0 1,418,130 + -0.3 1,418,198 + Dshi_1365 0.10 -0.2 1,418,244 + Dshi_1365 0.18 +1.4 1,418,252 - Dshi_1365 0.19 -0.7 1,418,291 + Dshi_1365 0.25 -0.7 1,418,311 - Dshi_1365 0.28 +0.4 1,418,312 - Dshi_1365 0.28 -0.3 1,418,537 + Dshi_1365 0.64 +0.4 1,418,561 - Dshi_1365 0.67 +1.2 1,418,620 - Dshi_1365 0.77 +1.1
Or see this region's nucleotide sequence