Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0888

Experiment: m.b. D-Cycloserine 0.048 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0887 and Dshi_0888 are separated by 7 nucleotidesDshi_0888 and Dshi_0889 are separated by 14 nucleotides Dshi_0887: Dshi_0887 - Serine--glyoxylate transaminase (RefSeq), at 902,124 to 903,314 _0887 Dshi_0888: Dshi_0888 - Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq), at 903,322 to 904,296 _0888 Dshi_0889: Dshi_0889 - alanine racemase domain protein (RefSeq), at 904,311 to 905,474 _0889 Position (kb) 903 904 905Strain fitness (log2 ratio) -1 0 1 2at 902.410 kb on + strand, within Dshi_0887at 902.503 kb on - strand, within Dshi_0887at 902.503 kb on - strand, within Dshi_0887at 902.509 kb on - strand, within Dshi_0887at 902.605 kb on - strand, within Dshi_0887at 902.633 kb on - strand, within Dshi_0887at 902.639 kb on - strand, within Dshi_0887at 902.891 kb on + strand, within Dshi_0887at 902.938 kb on + strand, within Dshi_0887at 902.983 kb on + strand, within Dshi_0887at 902.985 kb on - strand, within Dshi_0887at 903.011 kb on + strand, within Dshi_0887at 903.074 kb on - strand, within Dshi_0887at 903.109 kb on + strand, within Dshi_0887at 903.133 kb on + strand, within Dshi_0887at 903.180 kb on - strand, within Dshi_0887at 903.242 kb on + strandat 903.242 kb on + strandat 903.252 kb on - strandat 903.277 kb on + strandat 903.277 kb on + strandat 903.288 kb on + strandat 903.307 kb on - strandat 903.387 kb on + strandat 903.395 kb on - strandat 903.405 kb on + strandat 903.410 kb on + strandat 903.410 kb on + strandat 903.414 kb on + strandat 903.428 kb on - strand, within Dshi_0888at 903.444 kb on + strand, within Dshi_0888at 903.536 kb on + strand, within Dshi_0888at 903.544 kb on - strand, within Dshi_0888at 903.581 kb on + strand, within Dshi_0888at 903.756 kb on - strand, within Dshi_0888at 903.830 kb on + strand, within Dshi_0888at 903.891 kb on + strand, within Dshi_0888at 903.913 kb on - strand, within Dshi_0888at 903.942 kb on - strand, within Dshi_0888at 903.953 kb on + strand, within Dshi_0888at 903.999 kb on + strand, within Dshi_0888at 904.056 kb on - strand, within Dshi_0888at 904.099 kb on - strand, within Dshi_0888at 904.099 kb on - strand, within Dshi_0888at 904.099 kb on - strand, within Dshi_0888at 904.173 kb on + strand, within Dshi_0888at 904.186 kb on - strand, within Dshi_0888at 904.186 kb on - strand, within Dshi_0888at 904.199 kb on - strandat 904.250 kb on - strandat 904.290 kb on + strandat 904.291 kb on + strandat 904.295 kb on + strandat 904.299 kb on - strandat 904.337 kb on + strandat 904.425 kb on + strandat 904.561 kb on + strand, within Dshi_0889at 904.561 kb on + strand, within Dshi_0889at 904.592 kb on - strand, within Dshi_0889at 904.623 kb on + strand, within Dshi_0889at 905.066 kb on + strand, within Dshi_0889at 905.067 kb on + strand, within Dshi_0889at 905.077 kb on + strand, within Dshi_0889at 905.085 kb on - strand, within Dshi_0889at 905.218 kb on + strand, within Dshi_0889

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.048 mg/ml
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902,410 + Dshi_0887 0.24 -0.3
902,503 - Dshi_0887 0.32 -0.1
902,503 - Dshi_0887 0.32 +0.1
902,509 - Dshi_0887 0.32 +0.1
902,605 - Dshi_0887 0.40 +0.2
902,633 - Dshi_0887 0.43 -0.0
902,639 - Dshi_0887 0.43 +0.0
902,891 + Dshi_0887 0.64 -0.5
902,938 + Dshi_0887 0.68 -0.5
902,983 + Dshi_0887 0.72 +0.0
902,985 - Dshi_0887 0.72 -0.1
903,011 + Dshi_0887 0.74 -0.9
903,074 - Dshi_0887 0.80 -0.2
903,109 + Dshi_0887 0.83 -0.5
903,133 + Dshi_0887 0.85 +0.2
903,180 - Dshi_0887 0.89 -1.3
903,242 + +0.5
903,242 + -0.3
903,252 - -1.3
903,277 + +0.7
903,277 + +0.5
903,288 + +0.3
903,307 - +0.7
903,387 + +0.6
903,395 - +0.8
903,405 + +0.3
903,410 + +0.0
903,410 + -0.4
903,414 + -0.1
903,428 - Dshi_0888 0.11 +0.5
903,444 + Dshi_0888 0.13 +0.9
903,536 + Dshi_0888 0.22 -0.5
903,544 - Dshi_0888 0.23 -0.3
903,581 + Dshi_0888 0.27 -0.0
903,756 - Dshi_0888 0.45 +0.9
903,830 + Dshi_0888 0.52 +0.1
903,891 + Dshi_0888 0.58 +0.0
903,913 - Dshi_0888 0.61 -0.7
903,942 - Dshi_0888 0.64 -1.2
903,953 + Dshi_0888 0.65 +1.9
903,999 + Dshi_0888 0.69 +1.3
904,056 - Dshi_0888 0.75 -0.7
904,099 - Dshi_0888 0.80 +0.2
904,099 - Dshi_0888 0.80 -0.5
904,099 - Dshi_0888 0.80 +1.1
904,173 + Dshi_0888 0.87 -0.7
904,186 - Dshi_0888 0.89 -0.8
904,186 - Dshi_0888 0.89 +0.1
904,199 - -0.0
904,250 - +0.2
904,290 + -0.3
904,291 + +0.2
904,295 + -0.5
904,299 - +0.5
904,337 + -0.2
904,425 + -0.3
904,561 + Dshi_0889 0.21 +1.5
904,561 + Dshi_0889 0.21 -1.5
904,592 - Dshi_0889 0.24 +0.1
904,623 + Dshi_0889 0.27 +0.7
905,066 + Dshi_0889 0.65 -0.1
905,067 + Dshi_0889 0.65 +1.0
905,077 + Dshi_0889 0.66 -0.9
905,085 - Dshi_0889 0.66 -0.2
905,218 + Dshi_0889 0.78 +0.5

Or see this region's nucleotide sequence