Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0882

Experiment: m.b. D-Cycloserine 0.048 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0881 and Dshi_0882 are separated by 1 nucleotidesDshi_0882 and Dshi_0883 are separated by 4 nucleotidesDshi_0883 and Dshi_0884 are separated by 219 nucleotides Dshi_0881: Dshi_0881 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 896,659 to 897,645 _0881 Dshi_0882: Dshi_0882 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 897,647 to 898,615 _0882 Dshi_0883: Dshi_0883 - hypothetical protein (RefSeq), at 898,620 to 898,811 _0883 Dshi_0884: Dshi_0884 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 899,031 to 900,113 _0884 Position (kb) 897 898 899Strain fitness (log2 ratio) -2 -1 0 1at 896.648 kb on + strandat 896.706 kb on + strandat 896.709 kb on - strandat 896.719 kb on - strandat 896.817 kb on + strand, within Dshi_0881at 896.972 kb on - strand, within Dshi_0881at 896.972 kb on - strand, within Dshi_0881at 896.972 kb on - strand, within Dshi_0881at 897.309 kb on + strand, within Dshi_0881at 897.375 kb on + strand, within Dshi_0881at 897.381 kb on - strand, within Dshi_0881at 897.473 kb on + strand, within Dshi_0881at 897.541 kb on - strand, within Dshi_0881at 897.777 kb on - strand, within Dshi_0882at 897.863 kb on - strand, within Dshi_0882at 897.891 kb on + strand, within Dshi_0882at 897.940 kb on + strand, within Dshi_0882at 898.029 kb on + strand, within Dshi_0882at 898.031 kb on - strand, within Dshi_0882at 898.065 kb on + strand, within Dshi_0882at 898.228 kb on - strand, within Dshi_0882at 898.262 kb on + strand, within Dshi_0882at 898.317 kb on + strand, within Dshi_0882at 898.351 kb on - strand, within Dshi_0882at 898.562 kb on - strandat 898.653 kb on + strand, within Dshi_0883at 898.653 kb on - strand, within Dshi_0883at 898.822 kb on + strandat 898.869 kb on + strandat 899.024 kb on - strandat 899.064 kb on + strandat 899.151 kb on + strand, within Dshi_0884at 899.328 kb on + strand, within Dshi_0884at 899.437 kb on + strand, within Dshi_0884at 899.515 kb on + strand, within Dshi_0884at 899.550 kb on - strand, within Dshi_0884at 899.589 kb on - strand, within Dshi_0884

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.048 mg/ml
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896,648 + -0.1
896,706 + -0.7
896,709 - -1.6
896,719 - +0.1
896,817 + Dshi_0881 0.16 -1.3
896,972 - Dshi_0881 0.32 -1.6
896,972 - Dshi_0881 0.32 -1.1
896,972 - Dshi_0881 0.32 -1.1
897,309 + Dshi_0881 0.66 -1.7
897,375 + Dshi_0881 0.73 -1.0
897,381 - Dshi_0881 0.73 -0.3
897,473 + Dshi_0881 0.82 -1.0
897,541 - Dshi_0881 0.89 -0.1
897,777 - Dshi_0882 0.13 -0.9
897,863 - Dshi_0882 0.22 -1.1
897,891 + Dshi_0882 0.25 -1.3
897,940 + Dshi_0882 0.30 -1.1
898,029 + Dshi_0882 0.39 +0.5
898,031 - Dshi_0882 0.40 -0.5
898,065 + Dshi_0882 0.43 -0.2
898,228 - Dshi_0882 0.60 -1.3
898,262 + Dshi_0882 0.63 -1.4
898,317 + Dshi_0882 0.69 -1.3
898,351 - Dshi_0882 0.73 -0.5
898,562 - -1.3
898,653 + Dshi_0883 0.17 -0.7
898,653 - Dshi_0883 0.17 +0.6
898,822 + -1.1
898,869 + -0.5
899,024 - -1.9
899,064 + -1.5
899,151 + Dshi_0884 0.11 -0.9
899,328 + Dshi_0884 0.27 -0.8
899,437 + Dshi_0884 0.37 -0.3
899,515 + Dshi_0884 0.45 -2.4
899,550 - Dshi_0884 0.48 -2.5
899,589 - Dshi_0884 0.52 -2.0

Or see this region's nucleotide sequence