Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0827

Experiment: m.b. D-Cycloserine 0.048 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0826 and Dshi_0827 are separated by 173 nucleotidesDshi_0827 and Dshi_0828 overlap by 4 nucleotides Dshi_0826: Dshi_0826 - malic protein NAD-binding (RefSeq), at 832,910 to 835,189 _0826 Dshi_0827: Dshi_0827 - cytidine deaminase (RefSeq), at 835,363 to 835,755 _0827 Dshi_0828: Dshi_0828 - pyrimidine-nucleoside phosphorylase (RefSeq), at 835,752 to 837,059 _0828 Position (kb) 835 836Strain fitness (log2 ratio) -3 -2 -1 0 1at 834.449 kb on + strand, within Dshi_0826at 834.734 kb on - strand, within Dshi_0826at 834.767 kb on - strand, within Dshi_0826at 834.817 kb on - strand, within Dshi_0826at 834.817 kb on - strand, within Dshi_0826at 834.889 kb on + strand, within Dshi_0826at 834.902 kb on - strand, within Dshi_0826at 834.921 kb on - strand, within Dshi_0826at 834.999 kb on - strandat 835.111 kb on + strandat 835.111 kb on + strandat 835.344 kb on - strandat 835.379 kb on - strandat 835.418 kb on - strand, within Dshi_0827at 835.459 kb on - strand, within Dshi_0827at 835.469 kb on - strand, within Dshi_0827at 835.597 kb on - strand, within Dshi_0827at 835.622 kb on + strand, within Dshi_0827at 836.098 kb on - strand, within Dshi_0828at 836.237 kb on + strand, within Dshi_0828at 836.237 kb on + strand, within Dshi_0828at 836.330 kb on - strand, within Dshi_0828at 836.364 kb on - strand, within Dshi_0828at 836.474 kb on - strand, within Dshi_0828at 836.621 kb on + strand, within Dshi_0828

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.048 mg/ml
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834,449 + Dshi_0826 0.68 -1.8
834,734 - Dshi_0826 0.80 -0.5
834,767 - Dshi_0826 0.81 -0.8
834,817 - Dshi_0826 0.84 -2.2
834,817 - Dshi_0826 0.84 -0.8
834,889 + Dshi_0826 0.87 -2.2
834,902 - Dshi_0826 0.87 -2.8
834,921 - Dshi_0826 0.88 -1.3
834,999 - -2.8
835,111 + -3.0
835,111 + -0.1
835,344 - -0.8
835,379 - -0.6
835,418 - Dshi_0827 0.14 +1.3
835,459 - Dshi_0827 0.24 -0.5
835,469 - Dshi_0827 0.27 +0.4
835,597 - Dshi_0827 0.60 +0.3
835,622 + Dshi_0827 0.66 +0.4
836,098 - Dshi_0828 0.26 +0.2
836,237 + Dshi_0828 0.37 -0.1
836,237 + Dshi_0828 0.37 +0.9
836,330 - Dshi_0828 0.44 +0.1
836,364 - Dshi_0828 0.47 -0.1
836,474 - Dshi_0828 0.55 +0.3
836,621 + Dshi_0828 0.66 -0.8

Or see this region's nucleotide sequence