Experiment: m.b. D-Cycloserine 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0799 and Dshi_0800 are separated by 162 nucleotides Dshi_0800 and Dshi_0801 are separated by 7 nucleotides Dshi_0801 and Dshi_0802 overlap by 4 nucleotides Dshi_0802 and Dshi_0803 are separated by 50 nucleotides
Dshi_0799: Dshi_0799 - putative DNA-binding protein (RefSeq), at 805,880 to 806,218
_0799
Dshi_0800: Dshi_0800 - transcriptional regulator, IclR family (RefSeq), at 806,381 to 807,163
_0800
Dshi_0801: Dshi_0801 - TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq), at 807,171 to 808,529
_0801
Dshi_0802: Dshi_0802 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 808,526 to 809,254
_0802
Dshi_0803: Dshi_0803 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 809,305 to 810,537
_0803
Position (kb) 807
808
809 Strain fitness (log2 ratio) -2
-1
0
1
2 at 806.184 kb on + strand, within Dshi_0799 at 806.386 kb on - strand at 806.412 kb on - strand at 806.506 kb on + strand, within Dshi_0800 at 806.629 kb on + strand, within Dshi_0800 at 806.669 kb on - strand, within Dshi_0800 at 806.703 kb on + strand, within Dshi_0800 at 806.714 kb on + strand, within Dshi_0800 at 806.721 kb on - strand, within Dshi_0800 at 806.758 kb on + strand, within Dshi_0800 at 806.804 kb on - strand, within Dshi_0800 at 806.852 kb on - strand, within Dshi_0800 at 806.982 kb on - strand, within Dshi_0800 at 806.982 kb on - strand, within Dshi_0800 at 806.989 kb on - strand, within Dshi_0800 at 807.169 kb on + strand at 807.344 kb on - strand, within Dshi_0801 at 807.369 kb on - strand, within Dshi_0801 at 807.453 kb on + strand, within Dshi_0801 at 807.548 kb on + strand, within Dshi_0801 at 807.652 kb on + strand, within Dshi_0801 at 807.662 kb on + strand, within Dshi_0801 at 807.663 kb on + strand, within Dshi_0801 at 807.670 kb on - strand, within Dshi_0801 at 807.670 kb on - strand, within Dshi_0801 at 807.741 kb on + strand, within Dshi_0801 at 807.775 kb on - strand, within Dshi_0801 at 807.781 kb on - strand, within Dshi_0801 at 807.839 kb on + strand, within Dshi_0801 at 807.840 kb on + strand, within Dshi_0801 at 807.872 kb on + strand, within Dshi_0801 at 807.915 kb on + strand, within Dshi_0801 at 808.038 kb on + strand, within Dshi_0801 at 808.046 kb on - strand, within Dshi_0801 at 808.069 kb on + strand, within Dshi_0801 at 808.132 kb on + strand, within Dshi_0801 at 808.140 kb on - strand, within Dshi_0801 at 808.246 kb on + strand, within Dshi_0801 at 808.247 kb on + strand, within Dshi_0801 at 808.256 kb on + strand, within Dshi_0801 at 808.259 kb on - strand, within Dshi_0801 at 808.280 kb on - strand, within Dshi_0801 at 808.401 kb on - strand at 808.544 kb on + strand at 808.544 kb on + strand at 808.631 kb on - strand, within Dshi_0802 at 808.672 kb on - strand, within Dshi_0802 at 808.727 kb on - strand, within Dshi_0802 at 808.727 kb on - strand, within Dshi_0802 at 808.734 kb on + strand, within Dshi_0802 at 808.734 kb on + strand, within Dshi_0802 at 808.828 kb on + strand, within Dshi_0802 at 808.838 kb on + strand, within Dshi_0802 at 808.838 kb on + strand, within Dshi_0802 at 808.862 kb on + strand, within Dshi_0802 at 808.880 kb on - strand, within Dshi_0802 at 809.008 kb on - strand, within Dshi_0802 at 809.010 kb on - strand, within Dshi_0802 at 809.116 kb on + strand, within Dshi_0802 at 809.179 kb on + strand, within Dshi_0802 at 809.182 kb on - strand at 809.233 kb on + strand at 809.271 kb on - strand at 809.271 kb on - strand at 809.378 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.048 mg/ml remove 806,184 + Dshi_0799 0.90 +0.5 806,386 - +0.2 806,412 - +0.8 806,506 + Dshi_0800 0.16 -0.3 806,629 + Dshi_0800 0.32 +0.2 806,669 - Dshi_0800 0.37 +0.7 806,703 + Dshi_0800 0.41 -0.9 806,714 + Dshi_0800 0.43 -0.5 806,721 - Dshi_0800 0.43 -0.0 806,758 + Dshi_0800 0.48 -0.3 806,804 - Dshi_0800 0.54 +1.1 806,852 - Dshi_0800 0.60 -0.1 806,982 - Dshi_0800 0.77 -0.3 806,982 - Dshi_0800 0.77 -0.6 806,989 - Dshi_0800 0.78 -0.1 807,169 + -0.8 807,344 - Dshi_0801 0.13 +0.4 807,369 - Dshi_0801 0.15 +0.5 807,453 + Dshi_0801 0.21 -0.5 807,548 + Dshi_0801 0.28 -0.3 807,652 + Dshi_0801 0.35 +1.9 807,662 + Dshi_0801 0.36 +0.5 807,663 + Dshi_0801 0.36 -0.5 807,670 - Dshi_0801 0.37 -0.1 807,670 - Dshi_0801 0.37 +0.8 807,741 + Dshi_0801 0.42 +0.9 807,775 - Dshi_0801 0.44 -0.3 807,781 - Dshi_0801 0.45 +0.4 807,839 + Dshi_0801 0.49 -0.3 807,840 + Dshi_0801 0.49 -0.3 807,872 + Dshi_0801 0.52 -0.2 807,915 + Dshi_0801 0.55 -1.7 808,038 + Dshi_0801 0.64 -0.2 808,046 - Dshi_0801 0.64 -0.2 808,069 + Dshi_0801 0.66 +0.4 808,132 + Dshi_0801 0.71 +0.5 808,140 - Dshi_0801 0.71 +0.7 808,246 + Dshi_0801 0.79 -0.0 808,247 + Dshi_0801 0.79 -0.1 808,256 + Dshi_0801 0.80 +0.1 808,259 - Dshi_0801 0.80 +0.1 808,280 - Dshi_0801 0.82 -0.9 808,401 - -1.3 808,544 + -0.4 808,544 + -0.6 808,631 - Dshi_0802 0.14 -0.7 808,672 - Dshi_0802 0.20 -1.5 808,727 - Dshi_0802 0.28 +0.4 808,727 - Dshi_0802 0.28 +1.3 808,734 + Dshi_0802 0.29 +0.3 808,734 + Dshi_0802 0.29 +0.2 808,828 + Dshi_0802 0.41 +0.3 808,838 + Dshi_0802 0.43 -0.6 808,838 + Dshi_0802 0.43 -0.5 808,862 + Dshi_0802 0.46 -0.8 808,880 - Dshi_0802 0.49 +0.3 809,008 - Dshi_0802 0.66 +0.5 809,010 - Dshi_0802 0.66 -0.1 809,116 + Dshi_0802 0.81 -0.8 809,179 + Dshi_0802 0.90 +0.2 809,182 - -0.1 809,233 + -0.9 809,271 - +0.9 809,271 - -2.3 809,378 - -0.2
Or see this region's nucleotide sequence