Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0508

Experiment: m.b. D-Cycloserine 0.048 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0507 and Dshi_0508 are separated by 183 nucleotidesDshi_0508 and Dshi_0509 are separated by 93 nucleotides Dshi_0507: Dshi_0507 - MRP-like protein (ATP/GTP-binding protein) (RefSeq), at 492,087 to 493,133 _0507 Dshi_0508: Dshi_0508 - cytochrome c class I (RefSeq), at 493,317 to 494,531 _0508 Dshi_0509: Dshi_0509 - hypothetical protein (RefSeq), at 494,625 to 495,407 _0509 Position (kb) 493 494 495Strain fitness (log2 ratio) -2 -1 0 1 2at 492.335 kb on + strand, within Dshi_0507at 492.399 kb on + strand, within Dshi_0507at 492.480 kb on - strand, within Dshi_0507at 492.602 kb on + strand, within Dshi_0507at 492.610 kb on - strand, within Dshi_0507at 492.675 kb on - strand, within Dshi_0507at 492.776 kb on - strand, within Dshi_0507at 492.777 kb on - strand, within Dshi_0507at 492.820 kb on - strand, within Dshi_0507at 492.950 kb on + strand, within Dshi_0507at 492.985 kb on - strand, within Dshi_0507at 492.998 kb on + strand, within Dshi_0507at 493.021 kb on + strand, within Dshi_0507at 493.043 kb on + strandat 493.066 kb on - strandat 493.215 kb on - strandat 493.243 kb on - strandat 493.335 kb on - strandat 493.359 kb on + strandat 493.418 kb on + strandat 493.597 kb on + strand, within Dshi_0508at 493.615 kb on - strand, within Dshi_0508at 493.720 kb on + strand, within Dshi_0508at 493.787 kb on - strand, within Dshi_0508at 493.800 kb on + strand, within Dshi_0508at 493.831 kb on + strand, within Dshi_0508at 493.893 kb on + strand, within Dshi_0508at 493.901 kb on - strand, within Dshi_0508at 493.965 kb on + strand, within Dshi_0508at 494.022 kb on + strand, within Dshi_0508at 494.058 kb on - strand, within Dshi_0508at 494.067 kb on - strand, within Dshi_0508at 494.103 kb on - strand, within Dshi_0508at 494.197 kb on - strand, within Dshi_0508at 494.236 kb on + strand, within Dshi_0508at 494.236 kb on + strand, within Dshi_0508at 494.236 kb on + strand, within Dshi_0508at 494.266 kb on + strand, within Dshi_0508at 494.280 kb on - strand, within Dshi_0508at 494.302 kb on + strand, within Dshi_0508at 494.302 kb on + strand, within Dshi_0508at 494.310 kb on - strand, within Dshi_0508at 494.370 kb on + strand, within Dshi_0508at 494.378 kb on - strand, within Dshi_0508at 494.425 kb on - strandat 494.436 kb on - strandat 494.458 kb on + strandat 494.468 kb on - strandat 494.559 kb on + strandat 494.559 kb on + strandat 494.577 kb on - strandat 494.623 kb on + strandat 494.655 kb on + strandat 494.697 kb on - strandat 494.742 kb on + strand, within Dshi_0509at 494.793 kb on + strand, within Dshi_0509at 494.866 kb on - strand, within Dshi_0509at 494.926 kb on + strand, within Dshi_0509at 494.948 kb on + strand, within Dshi_0509at 495.121 kb on - strand, within Dshi_0509at 495.131 kb on - strand, within Dshi_0509at 495.154 kb on - strand, within Dshi_0509at 495.156 kb on + strand, within Dshi_0509at 495.166 kb on - strand, within Dshi_0509at 495.203 kb on + strand, within Dshi_0509at 495.211 kb on - strand, within Dshi_0509at 495.213 kb on + strand, within Dshi_0509at 495.216 kb on + strand, within Dshi_0509at 495.218 kb on + strand, within Dshi_0509at 495.309 kb on + strand, within Dshi_0509at 495.391 kb on + strandat 495.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.048 mg/ml
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492,335 + Dshi_0507 0.24 -1.5
492,399 + Dshi_0507 0.30 -0.3
492,480 - Dshi_0507 0.38 -1.2
492,602 + Dshi_0507 0.49 +0.2
492,610 - Dshi_0507 0.50 -0.1
492,675 - Dshi_0507 0.56 +0.5
492,776 - Dshi_0507 0.66 -0.1
492,777 - Dshi_0507 0.66 -0.1
492,820 - Dshi_0507 0.70 -0.9
492,950 + Dshi_0507 0.82 +0.0
492,985 - Dshi_0507 0.86 +0.5
492,998 + Dshi_0507 0.87 -0.2
493,021 + Dshi_0507 0.89 -0.2
493,043 + +0.1
493,066 - -0.2
493,215 - +0.6
493,243 - +0.6
493,335 - +0.7
493,359 + +0.3
493,418 + +0.3
493,597 + Dshi_0508 0.23 -0.9
493,615 - Dshi_0508 0.25 +0.8
493,720 + Dshi_0508 0.33 +0.2
493,787 - Dshi_0508 0.39 +0.0
493,800 + Dshi_0508 0.40 +0.6
493,831 + Dshi_0508 0.42 -1.1
493,893 + Dshi_0508 0.47 +0.2
493,901 - Dshi_0508 0.48 -1.3
493,965 + Dshi_0508 0.53 +0.1
494,022 + Dshi_0508 0.58 +0.0
494,058 - Dshi_0508 0.61 -0.8
494,067 - Dshi_0508 0.62 -0.2
494,103 - Dshi_0508 0.65 +0.2
494,197 - Dshi_0508 0.72 +0.3
494,236 + Dshi_0508 0.76 -0.0
494,236 + Dshi_0508 0.76 -0.7
494,236 + Dshi_0508 0.76 -1.9
494,266 + Dshi_0508 0.78 -0.5
494,280 - Dshi_0508 0.79 -1.0
494,302 + Dshi_0508 0.81 -0.9
494,302 + Dshi_0508 0.81 +0.5
494,310 - Dshi_0508 0.82 -1.3
494,370 + Dshi_0508 0.87 -0.5
494,378 - Dshi_0508 0.87 -0.4
494,425 - -0.2
494,436 - +0.5
494,458 + +0.9
494,468 - -0.2
494,559 + +0.7
494,559 + -0.7
494,577 - +0.0
494,623 + -1.1
494,655 + -0.6
494,697 - -1.4
494,742 + Dshi_0509 0.15 +1.0
494,793 + Dshi_0509 0.21 -0.2
494,866 - Dshi_0509 0.31 +0.5
494,926 + Dshi_0509 0.38 +1.9
494,948 + Dshi_0509 0.41 -0.6
495,121 - Dshi_0509 0.63 +0.5
495,131 - Dshi_0509 0.65 -0.4
495,154 - Dshi_0509 0.68 -0.9
495,156 + Dshi_0509 0.68 -0.2
495,166 - Dshi_0509 0.69 -0.7
495,203 + Dshi_0509 0.74 -0.4
495,211 - Dshi_0509 0.75 +0.6
495,213 + Dshi_0509 0.75 -0.7
495,216 + Dshi_0509 0.75 -1.7
495,218 + Dshi_0509 0.76 +0.9
495,309 + Dshi_0509 0.87 -1.0
495,391 + -0.3
495,526 - -2.1

Or see this region's nucleotide sequence