Experiment: m.b. D-Cycloserine 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0317 and Dshi_0318 are separated by 349 nucleotides Dshi_0318 and Dshi_0319 are separated by 120 nucleotides
Dshi_0317: Dshi_0317 - ATP12 ATPase (RefSeq), at 305,238 to 305,942
_0317
Dshi_0318: Dshi_0318 - cationic amino acid ABC transporter, periplasmic binding protein (RefSeq), at 306,292 to 307,308
_0318
Dshi_0319: Dshi_0319 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 307,429 to 308,664
_0319
Position (kb) 306
307
308 Strain fitness (log2 ratio) -2
-1
0
1 at 305.936 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 306.024 kb on - strand at 306.034 kb on - strand at 306.046 kb on - strand at 306.075 kb on + strand at 306.075 kb on + strand at 306.123 kb on + strand at 306.140 kb on - strand at 306.152 kb on - strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.217 kb on - strand at 306.220 kb on - strand at 306.221 kb on + strand at 306.265 kb on - strand at 306.273 kb on + strand at 306.281 kb on - strand at 306.281 kb on - strand at 306.293 kb on - strand at 306.332 kb on + strand at 306.332 kb on + strand at 306.332 kb on + strand at 306.363 kb on - strand at 306.373 kb on + strand at 306.381 kb on - strand at 306.381 kb on - strand at 306.388 kb on + strand at 306.388 kb on + strand at 306.396 kb on - strand, within Dshi_0318 at 306.396 kb on - strand, within Dshi_0318 at 306.396 kb on - strand, within Dshi_0318 at 306.402 kb on + strand, within Dshi_0318 at 306.407 kb on + strand, within Dshi_0318 at 306.458 kb on + strand, within Dshi_0318 at 306.466 kb on - strand, within Dshi_0318 at 306.469 kb on + strand, within Dshi_0318 at 306.474 kb on + strand, within Dshi_0318 at 306.474 kb on + strand, within Dshi_0318 at 306.507 kb on + strand, within Dshi_0318 at 306.507 kb on + strand, within Dshi_0318 at 306.521 kb on + strand, within Dshi_0318 at 306.538 kb on + strand, within Dshi_0318 at 306.541 kb on - strand, within Dshi_0318 at 306.546 kb on - strand, within Dshi_0318 at 306.556 kb on + strand, within Dshi_0318 at 306.661 kb on + strand, within Dshi_0318 at 306.661 kb on + strand, within Dshi_0318 at 306.668 kb on + strand, within Dshi_0318 at 306.669 kb on - strand, within Dshi_0318 at 306.669 kb on - strand, within Dshi_0318 at 306.727 kb on - strand, within Dshi_0318 at 306.914 kb on + strand, within Dshi_0318 at 306.930 kb on + strand, within Dshi_0318 at 306.973 kb on - strand, within Dshi_0318 at 307.042 kb on + strand, within Dshi_0318 at 307.113 kb on + strand, within Dshi_0318 at 307.277 kb on - strand at 307.277 kb on - strand at 307.279 kb on + strand at 307.284 kb on + strand at 307.284 kb on + strand at 307.287 kb on - strand at 307.287 kb on - strand at 307.292 kb on - strand at 307.372 kb on + strand at 307.377 kb on + strand at 307.380 kb on - strand at 307.380 kb on - strand at 307.382 kb on + strand at 307.421 kb on + strand at 307.426 kb on + strand at 307.528 kb on + strand at 307.573 kb on + strand, within Dshi_0319 at 307.588 kb on + strand, within Dshi_0319 at 307.588 kb on + strand, within Dshi_0319 at 307.598 kb on - strand, within Dshi_0319 at 307.604 kb on + strand, within Dshi_0319 at 307.641 kb on + strand, within Dshi_0319 at 307.674 kb on + strand, within Dshi_0319 at 307.740 kb on - strand, within Dshi_0319 at 307.782 kb on + strand, within Dshi_0319 at 307.887 kb on - strand, within Dshi_0319 at 307.946 kb on - strand, within Dshi_0319 at 307.965 kb on - strand, within Dshi_0319 at 307.968 kb on - strand, within Dshi_0319 at 307.983 kb on - strand, within Dshi_0319 at 307.993 kb on + strand, within Dshi_0319 at 307.995 kb on + strand, within Dshi_0319 at 308.111 kb on + strand, within Dshi_0319 at 308.210 kb on + strand, within Dshi_0319 at 308.210 kb on + strand, within Dshi_0319 at 308.210 kb on + strand, within Dshi_0319 at 308.218 kb on - strand, within Dshi_0319 at 308.218 kb on - strand, within Dshi_0319 at 308.233 kb on - strand, within Dshi_0319 at 308.269 kb on + strand, within Dshi_0319
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.048 mg/ml remove 305,936 + -1.0 305,948 + -0.8 305,948 + -0.7 305,948 + -0.3 305,948 + -2.3 305,948 + -0.3 305,948 + +0.0 305,948 + -0.7 305,948 + -1.3 305,948 + -1.2 305,948 + -0.5 305,948 + -1.6 305,948 + -0.2 305,948 + -0.8 305,948 + -2.4 305,948 + -1.3 305,948 + -1.1 305,948 + -0.1 305,948 + -1.3 305,948 + -0.7 305,948 + -0.9 305,948 + -0.4 305,948 + -1.0 305,948 + -0.5 305,948 + +0.4 305,948 + -1.0 305,948 + -1.8 305,956 - -1.3 305,956 - -0.6 305,956 - -0.9 305,956 - -1.0 305,956 - -0.7 305,956 - -0.4 305,956 - -0.5 305,956 - -1.9 305,956 - -1.4 305,956 - -0.8 305,956 - -0.3 305,956 - +0.8 305,956 - -2.3 305,956 - -0.6 305,956 - -0.5 305,956 - -0.1 305,956 - -1.3 305,956 - -0.1 305,956 - +0.5 305,956 - -1.8 306,024 - -1.9 306,034 - -0.3 306,046 - +0.1 306,075 + -0.6 306,075 + -0.8 306,123 + -1.2 306,140 - -1.0 306,152 - -1.0 306,200 + +0.3 306,200 + -2.7 306,200 + -1.2 306,200 + +0.2 306,200 + -2.7 306,208 - +0.7 306,208 - -0.8 306,208 - +0.2 306,208 - -1.6 306,208 - -0.1 306,217 - -1.6 306,220 - -1.2 306,221 + -0.3 306,265 - -0.2 306,273 + -1.5 306,281 - -0.5 306,281 - -1.0 306,293 - -0.3 306,332 + +0.5 306,332 + -0.9 306,332 + -0.9 306,363 - -1.1 306,373 + -0.5 306,381 - +0.7 306,381 - +0.8 306,388 + -1.7 306,388 + -0.4 306,396 - Dshi_0318 0.10 -1.7 306,396 - Dshi_0318 0.10 +0.8 306,396 - Dshi_0318 0.10 -0.7 306,402 + Dshi_0318 0.11 -1.9 306,407 + Dshi_0318 0.11 -1.1 306,458 + Dshi_0318 0.16 -0.8 306,466 - Dshi_0318 0.17 +0.2 306,469 + Dshi_0318 0.17 -0.8 306,474 + Dshi_0318 0.18 -1.4 306,474 + Dshi_0318 0.18 -1.9 306,507 + Dshi_0318 0.21 -0.4 306,507 + Dshi_0318 0.21 -1.2 306,521 + Dshi_0318 0.23 -1.1 306,538 + Dshi_0318 0.24 -1.1 306,541 - Dshi_0318 0.24 -1.7 306,546 - Dshi_0318 0.25 +0.3 306,556 + Dshi_0318 0.26 -0.5 306,661 + Dshi_0318 0.36 -0.1 306,661 + Dshi_0318 0.36 +0.1 306,668 + Dshi_0318 0.37 -1.6 306,669 - Dshi_0318 0.37 +0.4 306,669 - Dshi_0318 0.37 -1.7 306,727 - Dshi_0318 0.43 -1.3 306,914 + Dshi_0318 0.61 -1.4 306,930 + Dshi_0318 0.63 -0.6 306,973 - Dshi_0318 0.67 +1.0 307,042 + Dshi_0318 0.74 -1.0 307,113 + Dshi_0318 0.81 -1.8 307,277 - -2.7 307,277 - +0.1 307,279 + -0.5 307,284 + -0.8 307,284 + -1.7 307,287 - -0.4 307,287 - -0.9 307,292 - +0.9 307,372 + -0.5 307,377 + -0.7 307,380 - -2.3 307,380 - -1.5 307,382 + -0.5 307,421 + -0.9 307,426 + -0.6 307,528 + -0.8 307,573 + Dshi_0319 0.12 -1.6 307,588 + Dshi_0319 0.13 -1.1 307,588 + Dshi_0319 0.13 -1.1 307,598 - Dshi_0319 0.14 -0.1 307,604 + Dshi_0319 0.14 -0.6 307,641 + Dshi_0319 0.17 -2.7 307,674 + Dshi_0319 0.20 -0.2 307,740 - Dshi_0319 0.25 -0.6 307,782 + Dshi_0319 0.29 +0.0 307,887 - Dshi_0319 0.37 -1.3 307,946 - Dshi_0319 0.42 -0.2 307,965 - Dshi_0319 0.43 -0.8 307,968 - Dshi_0319 0.44 -0.9 307,983 - Dshi_0319 0.45 -1.2 307,993 + Dshi_0319 0.46 -1.5 307,995 + Dshi_0319 0.46 -0.4 308,111 + Dshi_0319 0.55 -0.8 308,210 + Dshi_0319 0.63 -0.9 308,210 + Dshi_0319 0.63 +0.1 308,210 + Dshi_0319 0.63 -1.1 308,218 - Dshi_0319 0.64 -1.9 308,218 - Dshi_0319 0.64 -0.7 308,233 - Dshi_0319 0.65 -0.3 308,269 + Dshi_0319 0.68 -1.6
Or see this region's nucleotide sequence