Experiment: m.b. D-Cycloserine 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0311 and Dshi_0312 are separated by 56 nucleotides Dshi_0312 and Dshi_0313 are separated by 179 nucleotides
Dshi_0311: Dshi_0311 - transcriptional regulator, LuxR family (RefSeq), at 300,364 to 300,975
_0311
Dshi_0312: Dshi_0312 - N-acyl-L-homoserine lactone synthetase-like protein (RefSeq), at 301,032 to 301,619
_0312
Dshi_0313: Dshi_0313 - AAA ATPase central domain protein (RefSeq), at 301,799 to 303,109
_0313
Position (kb)
301
302 Strain fitness (log2 ratio)
-2
-1
0
1 at 300.171 kb on + strand at 300.173 kb on + strand at 300.238 kb on + strand at 300.336 kb on - strand at 300.368 kb on + strand at 300.388 kb on - strand at 300.445 kb on - strand, within Dshi_0311 at 300.463 kb on + strand, within Dshi_0311 at 300.484 kb on + strand, within Dshi_0311 at 300.490 kb on - strand, within Dshi_0311 at 300.511 kb on + strand, within Dshi_0311 at 300.516 kb on + strand, within Dshi_0311 at 300.516 kb on + strand, within Dshi_0311 at 300.518 kb on + strand, within Dshi_0311 at 300.536 kb on - strand, within Dshi_0311 at 300.630 kb on + strand, within Dshi_0311 at 300.638 kb on - strand, within Dshi_0311 at 300.649 kb on - strand, within Dshi_0311 at 300.657 kb on + strand, within Dshi_0311 at 300.669 kb on + strand, within Dshi_0311 at 300.714 kb on + strand, within Dshi_0311 at 300.722 kb on - strand, within Dshi_0311 at 300.804 kb on + strand, within Dshi_0311 at 300.915 kb on - strand at 300.965 kb on - strand at 300.977 kb on - strand at 300.978 kb on - strand at 301.022 kb on + strand at 301.112 kb on - strand, within Dshi_0312 at 301.137 kb on + strand, within Dshi_0312 at 301.182 kb on + strand, within Dshi_0312 at 301.220 kb on + strand, within Dshi_0312 at 301.239 kb on - strand, within Dshi_0312 at 301.323 kb on - strand, within Dshi_0312 at 301.436 kb on - strand, within Dshi_0312 at 301.453 kb on - strand, within Dshi_0312 at 301.479 kb on - strand, within Dshi_0312 at 301.604 kb on - strand at 301.604 kb on - strand at 301.636 kb on + strand at 301.636 kb on + strand at 301.777 kb on + strand at 301.808 kb on - strand at 301.884 kb on + strand at 301.903 kb on + strand at 302.083 kb on + strand, within Dshi_0313 at 302.267 kb on + strand, within Dshi_0313 at 302.275 kb on - strand, within Dshi_0313 at 302.613 kb on - strand, within Dshi_0313
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.048 mg/ml remove 300,171 + -0.9 300,173 + -0.5 300,238 + +0.5 300,336 - -0.6 300,368 + -0.2 300,388 - -0.4 300,445 - Dshi_0311 0.13 +0.1 300,463 + Dshi_0311 0.16 -0.2 300,484 + Dshi_0311 0.20 -0.0 300,490 - Dshi_0311 0.21 -0.8 300,511 + Dshi_0311 0.24 +0.5 300,516 + Dshi_0311 0.25 -0.8 300,516 + Dshi_0311 0.25 -0.7 300,518 + Dshi_0311 0.25 +1.0 300,536 - Dshi_0311 0.28 -0.9 300,630 + Dshi_0311 0.43 -0.8 300,638 - Dshi_0311 0.45 +0.3 300,649 - Dshi_0311 0.47 -0.5 300,657 + Dshi_0311 0.48 -0.3 300,669 + Dshi_0311 0.50 -0.8 300,714 + Dshi_0311 0.57 -0.2 300,722 - Dshi_0311 0.58 -0.9 300,804 + Dshi_0311 0.72 -1.1 300,915 - -0.4 300,965 - -0.6 300,977 - -0.8 300,978 - +0.8 301,022 + -0.8 301,112 - Dshi_0312 0.14 -0.6 301,137 + Dshi_0312 0.18 -0.7 301,182 + Dshi_0312 0.26 -1.1 301,220 + Dshi_0312 0.32 +1.2 301,239 - Dshi_0312 0.35 -0.6 301,323 - Dshi_0312 0.49 -0.6 301,436 - Dshi_0312 0.69 -0.6 301,453 - Dshi_0312 0.72 +0.5 301,479 - Dshi_0312 0.76 -1.3 301,604 - +0.5 301,604 - -0.5 301,636 + -0.4 301,636 + +0.2 301,777 + -0.1 301,808 - -2.4 301,884 + -2.3 301,903 + +0.7 302,083 + Dshi_0313 0.22 -0.4 302,267 + Dshi_0313 0.36 -0.1 302,275 - Dshi_0313 0.36 -1.7 302,613 - Dshi_0313 0.62 +0.0
Or see this region's nucleotide sequence