Experiment: m.b. D-Cycloserine 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0208 and Dshi_0209 are separated by 37 nucleotides Dshi_0209 and Dshi_0210 are separated by 12 nucleotides Dshi_0210 and Dshi_0211 are separated by 2 nucleotides
Dshi_0208: Dshi_0208 - PTS system fructose subfamily IIA component (RefSeq), at 205,876 to 206,265
_0208
Dshi_0209: Dshi_0209 - hypothetical protein (RefSeq), at 206,303 to 207,205
_0209
Dshi_0210: Dshi_0210 - HPr kinase (RefSeq), at 207,218 to 207,655
_0210
Dshi_0211: Dshi_0211 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 207,658 to 209,376
_0211
Position (kb)
207
208 Strain fitness (log2 ratio)
-2
-1
0
1 at 206.273 kb on + strand at 206.299 kb on + strand at 206.580 kb on - strand, within Dshi_0209 at 206.581 kb on + strand, within Dshi_0209 at 206.692 kb on + strand, within Dshi_0209 at 206.740 kb on + strand, within Dshi_0209 at 206.740 kb on + strand, within Dshi_0209 at 206.748 kb on - strand, within Dshi_0209 at 206.749 kb on - strand, within Dshi_0209 at 206.751 kb on - strand, within Dshi_0209 at 206.755 kb on + strand, within Dshi_0209 at 206.763 kb on - strand, within Dshi_0209 at 206.775 kb on + strand, within Dshi_0209 at 206.800 kb on - strand, within Dshi_0209 at 207.128 kb on - strand at 207.185 kb on + strand at 207.256 kb on + strand at 207.264 kb on - strand, within Dshi_0210 at 207.288 kb on + strand, within Dshi_0210 at 207.307 kb on + strand, within Dshi_0210 at 207.378 kb on - strand, within Dshi_0210 at 207.388 kb on - strand, within Dshi_0210 at 207.415 kb on - strand, within Dshi_0210 at 207.461 kb on + strand, within Dshi_0210 at 207.488 kb on + strand, within Dshi_0210 at 207.570 kb on - strand, within Dshi_0210 at 207.574 kb on - strand, within Dshi_0210 at 207.656 kb on + strand at 207.737 kb on + strand at 207.787 kb on + strand at 207.787 kb on + strand at 207.792 kb on + strand at 207.838 kb on - strand, within Dshi_0211 at 207.954 kb on + strand, within Dshi_0211 at 207.981 kb on - strand, within Dshi_0211 at 208.099 kb on - strand, within Dshi_0211 at 208.130 kb on - strand, within Dshi_0211 at 208.150 kb on - strand, within Dshi_0211 at 208.188 kb on + strand, within Dshi_0211 at 208.226 kb on + strand, within Dshi_0211 at 208.244 kb on - strand, within Dshi_0211 at 208.357 kb on - strand, within Dshi_0211 at 208.604 kb on - strand, within Dshi_0211 at 208.655 kb on - strand, within Dshi_0211
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.048 mg/ml remove 206,273 + -1.3 206,299 + +0.0 206,580 - Dshi_0209 0.31 -0.1 206,581 + Dshi_0209 0.31 +0.4 206,692 + Dshi_0209 0.43 +1.0 206,740 + Dshi_0209 0.48 -0.3 206,740 + Dshi_0209 0.48 +0.4 206,748 - Dshi_0209 0.49 -0.1 206,749 - Dshi_0209 0.49 +1.1 206,751 - Dshi_0209 0.50 +0.2 206,755 + Dshi_0209 0.50 -0.5 206,763 - Dshi_0209 0.51 -0.1 206,775 + Dshi_0209 0.52 -0.5 206,800 - Dshi_0209 0.55 +0.4 207,128 - +0.1 207,185 + -0.2 207,256 + -0.1 207,264 - Dshi_0210 0.11 -0.4 207,288 + Dshi_0210 0.16 -0.1 207,307 + Dshi_0210 0.20 -1.8 207,378 - Dshi_0210 0.37 -1.0 207,388 - Dshi_0210 0.39 +0.1 207,415 - Dshi_0210 0.45 -0.6 207,461 + Dshi_0210 0.55 -1.8 207,488 + Dshi_0210 0.62 -1.3 207,570 - Dshi_0210 0.80 -0.3 207,574 - Dshi_0210 0.81 -0.1 207,656 + -0.3 207,737 + +0.5 207,787 + +0.7 207,787 + +1.0 207,792 + -0.6 207,838 - Dshi_0211 0.10 -0.2 207,954 + Dshi_0211 0.17 -0.9 207,981 - Dshi_0211 0.19 -0.5 208,099 - Dshi_0211 0.26 +0.9 208,130 - Dshi_0211 0.27 -0.7 208,150 - Dshi_0211 0.29 -1.6 208,188 + Dshi_0211 0.31 -0.8 208,226 + Dshi_0211 0.33 +0.1 208,244 - Dshi_0211 0.34 -0.5 208,357 - Dshi_0211 0.41 -1.1 208,604 - Dshi_0211 0.55 -0.6 208,655 - Dshi_0211 0.58 +0.2
Or see this region's nucleotide sequence