Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00890

Experiment: m.b. Phosphomycin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00870 and PGA1_c00880 are separated by 75 nucleotidesPGA1_c00880 and PGA1_c00890 overlap by 4 nucleotidesPGA1_c00890 and PGA1_c00900 are separated by 69 nucleotidesPGA1_c00900 and PGA1_c00910 are separated by 12 nucleotides PGA1_c00870: PGA1_c00870 - peptide deformylase Def, at 86,153 to 86,671 _c00870 PGA1_c00880: PGA1_c00880 - peptide deformylase Def, at 86,747 to 87,256 _c00880 PGA1_c00890: PGA1_c00890 - peptide deformylase Def, at 87,253 to 87,750 _c00890 PGA1_c00900: PGA1_c00900 - methionyl-tRNA formyltransferase Fmt, at 87,820 to 88,725 _c00900 PGA1_c00910: PGA1_c00910 - hypothetical protein, at 88,738 to 88,974 _c00910 Position (kb) 87 88Strain fitness (log2 ratio) -3 -2 -1 0 1at 86.628 kb on + strandat 86.696 kb on - strandat 86.705 kb on + strandat 86.711 kb on + strandat 86.711 kb on + strandat 86.711 kb on + strandat 86.711 kb on + strandat 86.713 kb on - strandat 86.720 kb on - strandat 86.791 kb on - strandat 86.889 kb on + strand, within PGA1_c00880at 86.934 kb on + strand, within PGA1_c00880at 86.942 kb on - strand, within PGA1_c00880at 86.957 kb on + strand, within PGA1_c00880at 86.957 kb on + strand, within PGA1_c00880at 86.962 kb on + strand, within PGA1_c00880at 86.965 kb on - strand, within PGA1_c00880at 86.982 kb on + strand, within PGA1_c00880at 87.045 kb on + strand, within PGA1_c00880at 87.045 kb on + strand, within PGA1_c00880at 87.053 kb on - strand, within PGA1_c00880at 87.053 kb on - strand, within PGA1_c00880at 87.117 kb on + strand, within PGA1_c00880at 87.117 kb on + strand, within PGA1_c00880at 87.117 kb on + strand, within PGA1_c00880at 87.117 kb on + strand, within PGA1_c00880at 87.125 kb on - strand, within PGA1_c00880at 87.145 kb on - strand, within PGA1_c00880at 87.162 kb on + strand, within PGA1_c00880at 87.162 kb on + strand, within PGA1_c00880at 87.187 kb on - strand, within PGA1_c00880at 87.189 kb on - strand, within PGA1_c00880at 87.190 kb on + strand, within PGA1_c00880at 87.195 kb on + strand, within PGA1_c00880at 87.203 kb on - strand, within PGA1_c00880at 87.249 kb on + strandat 87.257 kb on - strandat 87.257 kb on - strandat 87.268 kb on + strandat 87.273 kb on + strandat 87.281 kb on - strandat 87.310 kb on - strand, within PGA1_c00890at 87.313 kb on - strand, within PGA1_c00890at 87.341 kb on + strand, within PGA1_c00890at 87.370 kb on - strand, within PGA1_c00890at 87.383 kb on + strand, within PGA1_c00890at 87.395 kb on + strand, within PGA1_c00890at 87.430 kb on - strand, within PGA1_c00890at 87.453 kb on + strand, within PGA1_c00890at 87.463 kb on - strand, within PGA1_c00890at 87.474 kb on - strand, within PGA1_c00890at 87.526 kb on + strand, within PGA1_c00890at 87.527 kb on + strand, within PGA1_c00890at 87.535 kb on - strand, within PGA1_c00890at 87.563 kb on - strand, within PGA1_c00890at 87.592 kb on + strand, within PGA1_c00890at 87.592 kb on + strand, within PGA1_c00890at 87.592 kb on + strand, within PGA1_c00890at 87.610 kb on - strand, within PGA1_c00890at 87.696 kb on + strand, within PGA1_c00890at 87.704 kb on - strandat 87.715 kb on + strandat 87.715 kb on + strandat 87.715 kb on + strandat 87.792 kb on + strandat 87.803 kb on + strandat 87.803 kb on + strandat 87.803 kb on + strandat 87.805 kb on + strandat 87.812 kb on + strandat 88.719 kb on + strandat 88.719 kb on - strandat 88.727 kb on + strandat 88.727 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml
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86,628 + -0.8
86,696 - +0.1
86,705 + +0.3
86,711 + +0.7
86,711 + -0.3
86,711 + +0.4
86,711 + +0.3
86,713 - -1.1
86,720 - -0.6
86,791 - -0.8
86,889 + PGA1_c00880 0.28 -0.8
86,934 + PGA1_c00880 0.37 +0.6
86,942 - PGA1_c00880 0.38 -0.8
86,957 + PGA1_c00880 0.41 +1.0
86,957 + PGA1_c00880 0.41 -1.1
86,962 + PGA1_c00880 0.42 -0.1
86,965 - PGA1_c00880 0.43 +0.7
86,982 + PGA1_c00880 0.46 +0.9
87,045 + PGA1_c00880 0.58 +0.2
87,045 + PGA1_c00880 0.58 -0.2
87,053 - PGA1_c00880 0.60 -0.2
87,053 - PGA1_c00880 0.60 -1.1
87,117 + PGA1_c00880 0.73 -0.7
87,117 + PGA1_c00880 0.73 +1.7
87,117 + PGA1_c00880 0.73 +0.8
87,117 + PGA1_c00880 0.73 -0.3
87,125 - PGA1_c00880 0.74 +0.0
87,145 - PGA1_c00880 0.78 -0.3
87,162 + PGA1_c00880 0.81 +1.1
87,162 + PGA1_c00880 0.81 +0.6
87,187 - PGA1_c00880 0.86 +0.5
87,189 - PGA1_c00880 0.87 -0.4
87,190 + PGA1_c00880 0.87 +0.7
87,195 + PGA1_c00880 0.88 -1.3
87,203 - PGA1_c00880 0.89 -1.6
87,249 + -0.4
87,257 - -0.7
87,257 - -0.5
87,268 + +0.8
87,273 + -0.7
87,281 - +0.7
87,310 - PGA1_c00890 0.11 +0.4
87,313 - PGA1_c00890 0.12 -3.0
87,341 + PGA1_c00890 0.18 -1.2
87,370 - PGA1_c00890 0.23 -0.0
87,383 + PGA1_c00890 0.26 -1.8
87,395 + PGA1_c00890 0.29 -0.4
87,430 - PGA1_c00890 0.36 -0.3
87,453 + PGA1_c00890 0.40 -1.6
87,463 - PGA1_c00890 0.42 -0.7
87,474 - PGA1_c00890 0.44 -0.1
87,526 + PGA1_c00890 0.55 +0.6
87,527 + PGA1_c00890 0.55 +0.0
87,535 - PGA1_c00890 0.57 -2.3
87,563 - PGA1_c00890 0.62 -1.0
87,592 + PGA1_c00890 0.68 -1.3
87,592 + PGA1_c00890 0.68 -0.3
87,592 + PGA1_c00890 0.68 +1.2
87,610 - PGA1_c00890 0.72 +1.0
87,696 + PGA1_c00890 0.89 -0.6
87,704 - +0.2
87,715 + +0.0
87,715 + -0.4
87,715 + -0.4
87,792 + -1.3
87,803 + -2.7
87,803 + +0.1
87,803 + -0.6
87,805 + -0.4
87,812 + +0.1
88,719 + +0.3
88,719 - +0.4
88,727 + +1.4
88,727 - +0.2

Or see this region's nucleotide sequence