Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05740

Experiment: m.b. Phosphomycin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05720 and PGA1_c05730 are separated by 216 nucleotidesPGA1_c05730 and PGA1_c05740 are separated by 228 nucleotidesPGA1_c05740 and PGA1_c05750 are separated by 160 nucleotidesPGA1_c05750 and PGA1_c05760 are separated by 97 nucleotides PGA1_c05720: PGA1_c05720 - hypothetical protein, at 587,139 to 587,483 _c05720 PGA1_c05730: PGA1_c05730 - putative methylated-DNA--protein-cysteine methyltransferase, at 587,700 to 588,188 _c05730 PGA1_c05740: PGA1_c05740 - phosphatidylcholine synthase Pcs, at 588,417 to 589,112 _c05740 PGA1_c05750: PGA1_c05750 - hypothetical protein, at 589,273 to 589,614 _c05750 PGA1_c05760: PGA1_c05760 - putative tyrosine recombinase XerC, at 589,712 to 590,647 _c05760 Position (kb) 588 589 590Strain fitness (log2 ratio) -2 -1 0 1at 587.423 kb on - strand, within PGA1_c05720at 587.478 kb on - strandat 587.548 kb on + strandat 587.550 kb on + strandat 587.556 kb on - strandat 587.556 kb on - strandat 587.556 kb on - strandat 587.556 kb on - strandat 587.575 kb on + strandat 587.637 kb on + strandat 587.645 kb on - strandat 587.645 kb on - strandat 587.666 kb on - strandat 587.671 kb on - strandat 587.690 kb on + strandat 587.773 kb on - strand, within PGA1_c05730at 587.783 kb on - strand, within PGA1_c05730at 588.049 kb on - strand, within PGA1_c05730at 588.079 kb on + strand, within PGA1_c05730at 588.203 kb on + strandat 588.216 kb on + strandat 588.224 kb on - strandat 588.234 kb on - strandat 588.391 kb on + strandat 588.423 kb on - strandat 588.485 kb on - strandat 589.098 kb on + strandat 589.200 kb on + strandat 589.227 kb on + strandat 589.245 kb on + strandat 589.294 kb on + strandat 589.326 kb on + strand, within PGA1_c05750at 589.326 kb on + strand, within PGA1_c05750at 589.344 kb on + strand, within PGA1_c05750at 589.369 kb on - strand, within PGA1_c05750at 589.460 kb on - strand, within PGA1_c05750at 589.470 kb on - strand, within PGA1_c05750at 589.470 kb on - strand, within PGA1_c05750at 589.620 kb on - strandat 589.669 kb on - strandat 589.669 kb on - strandat 589.706 kb on - strandat 589.708 kb on + strandat 589.708 kb on + strandat 589.708 kb on + strandat 589.716 kb on - strandat 589.716 kb on - strandat 589.716 kb on - strandat 589.716 kb on - strandat 589.770 kb on + strandat 589.770 kb on + strandat 589.778 kb on - strandat 589.778 kb on - strandat 589.961 kb on + strand, within PGA1_c05760at 590.062 kb on - strand, within PGA1_c05760

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml
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587,423 - PGA1_c05720 0.82 -2.0
587,478 - -0.4
587,548 + -0.9
587,550 + -1.3
587,556 - +0.5
587,556 - -1.2
587,556 - -0.3
587,556 - -0.2
587,575 + +0.0
587,637 + +0.0
587,645 - +0.3
587,645 - -0.8
587,666 - -0.1
587,671 - +0.5
587,690 + +0.1
587,773 - PGA1_c05730 0.15 -0.4
587,783 - PGA1_c05730 0.17 +1.1
588,049 - PGA1_c05730 0.71 +0.7
588,079 + PGA1_c05730 0.78 +0.5
588,203 + -0.1
588,216 + -2.6
588,224 - -0.1
588,234 - +0.8
588,391 + -0.1
588,423 - +0.3
588,485 - -0.5
589,098 + -1.1
589,200 + +0.5
589,227 + +0.0
589,245 + +0.3
589,294 + +0.1
589,326 + PGA1_c05750 0.15 +0.7
589,326 + PGA1_c05750 0.15 -1.4
589,344 + PGA1_c05750 0.21 -0.5
589,369 - PGA1_c05750 0.28 +0.3
589,460 - PGA1_c05750 0.55 -1.0
589,470 - PGA1_c05750 0.58 -2.4
589,470 - PGA1_c05750 0.58 +0.5
589,620 - +0.4
589,669 - -1.2
589,669 - +0.1
589,706 - +1.6
589,708 + -0.9
589,708 + +0.2
589,708 + -0.1
589,716 - -0.3
589,716 - -0.2
589,716 - +1.5
589,716 - -1.6
589,770 + +0.2
589,770 + +0.3
589,778 - -1.3
589,778 - -0.3
589,961 + PGA1_c05760 0.27 -0.5
590,062 - PGA1_c05760 0.37 -0.1

Or see this region's nucleotide sequence