Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05220

Experiment: m.b. Phosphomycin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05210 and PGA1_c05220 are separated by 7 nucleotidesPGA1_c05220 and PGA1_c05230 are separated by 111 nucleotides PGA1_c05210: PGA1_c05210 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 514,433 to 515,548 _c05210 PGA1_c05220: PGA1_c05220 - putative sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 515,556 to 516,674 _c05220 PGA1_c05230: PGA1_c05230 - ABC transporter, extracellular solute-binding protein, at 516,786 to 518,519 _c05230 Position (kb) 515 516 517Strain fitness (log2 ratio) -2 -1 0 1 2at 514.562 kb on - strand, within PGA1_c05210at 514.564 kb on + strand, within PGA1_c05210at 514.584 kb on + strand, within PGA1_c05210at 514.584 kb on + strand, within PGA1_c05210at 514.592 kb on - strand, within PGA1_c05210at 514.613 kb on + strand, within PGA1_c05210at 514.621 kb on - strand, within PGA1_c05210at 514.628 kb on - strand, within PGA1_c05210at 514.656 kb on + strand, within PGA1_c05210at 514.720 kb on - strand, within PGA1_c05210at 514.720 kb on - strand, within PGA1_c05210at 514.720 kb on - strand, within PGA1_c05210at 514.758 kb on - strand, within PGA1_c05210at 514.770 kb on + strand, within PGA1_c05210at 514.770 kb on + strand, within PGA1_c05210at 514.775 kb on + strand, within PGA1_c05210at 514.778 kb on - strand, within PGA1_c05210at 514.800 kb on - strand, within PGA1_c05210at 514.850 kb on + strand, within PGA1_c05210at 514.857 kb on + strand, within PGA1_c05210at 514.891 kb on - strand, within PGA1_c05210at 514.931 kb on + strand, within PGA1_c05210at 514.962 kb on - strand, within PGA1_c05210at 514.974 kb on + strand, within PGA1_c05210at 515.029 kb on - strand, within PGA1_c05210at 515.069 kb on + strand, within PGA1_c05210at 515.195 kb on + strand, within PGA1_c05210at 515.197 kb on + strand, within PGA1_c05210at 515.203 kb on - strand, within PGA1_c05210at 515.223 kb on + strand, within PGA1_c05210at 515.226 kb on - strand, within PGA1_c05210at 515.231 kb on - strand, within PGA1_c05210at 515.277 kb on + strand, within PGA1_c05210at 515.301 kb on + strand, within PGA1_c05210at 515.301 kb on + strand, within PGA1_c05210at 515.309 kb on - strand, within PGA1_c05210at 515.309 kb on - strand, within PGA1_c05210at 515.311 kb on + strand, within PGA1_c05210at 515.398 kb on - strand, within PGA1_c05210at 515.431 kb on + strand, within PGA1_c05210at 515.445 kb on + strandat 515.446 kb on + strandat 515.499 kb on - strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.514 kb on - strandat 515.514 kb on - strandat 515.514 kb on - strandat 515.516 kb on + strandat 515.533 kb on + strandat 515.554 kb on - strandat 515.614 kb on + strandat 515.633 kb on + strandat 515.642 kb on + strandat 515.719 kb on + strand, within PGA1_c05220at 515.729 kb on + strand, within PGA1_c05220at 515.729 kb on + strand, within PGA1_c05220at 515.747 kb on + strand, within PGA1_c05220at 515.750 kb on - strand, within PGA1_c05220at 515.800 kb on + strand, within PGA1_c05220at 515.862 kb on + strand, within PGA1_c05220at 515.870 kb on - strand, within PGA1_c05220at 515.882 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.895 kb on - strand, within PGA1_c05220at 515.895 kb on - strand, within PGA1_c05220at 515.948 kb on + strand, within PGA1_c05220at 515.953 kb on + strand, within PGA1_c05220at 515.956 kb on - strand, within PGA1_c05220at 516.004 kb on + strand, within PGA1_c05220at 516.010 kb on + strand, within PGA1_c05220at 516.018 kb on - strand, within PGA1_c05220at 516.039 kb on - strand, within PGA1_c05220at 516.077 kb on + strand, within PGA1_c05220at 516.204 kb on - strand, within PGA1_c05220at 516.209 kb on - strand, within PGA1_c05220at 516.209 kb on - strand, within PGA1_c05220at 516.219 kb on + strand, within PGA1_c05220at 516.219 kb on + strand, within PGA1_c05220at 516.257 kb on + strand, within PGA1_c05220at 516.372 kb on - strand, within PGA1_c05220at 516.431 kb on + strand, within PGA1_c05220at 516.441 kb on - strand, within PGA1_c05220at 516.587 kb on + strandat 516.592 kb on + strandat 516.711 kb on - strandat 516.751 kb on + strandat 516.768 kb on + strandat 516.783 kb on + strandat 516.783 kb on - strandat 516.791 kb on - strandat 516.815 kb on + strandat 516.829 kb on + strandat 516.837 kb on - strandat 516.945 kb on - strandat 516.958 kb on - strandat 516.962 kb on + strand, within PGA1_c05230at 516.969 kb on + strand, within PGA1_c05230at 516.970 kb on - strand, within PGA1_c05230at 517.002 kb on + strand, within PGA1_c05230at 517.002 kb on + strand, within PGA1_c05230at 517.033 kb on + strand, within PGA1_c05230at 517.041 kb on - strand, within PGA1_c05230at 517.060 kb on - strand, within PGA1_c05230at 517.070 kb on - strand, within PGA1_c05230at 517.073 kb on + strand, within PGA1_c05230at 517.073 kb on + strand, within PGA1_c05230at 517.073 kb on + strand, within PGA1_c05230at 517.091 kb on + strand, within PGA1_c05230at 517.110 kb on - strand, within PGA1_c05230at 517.173 kb on + strand, within PGA1_c05230at 517.180 kb on - strand, within PGA1_c05230at 517.198 kb on - strand, within PGA1_c05230at 517.212 kb on + strand, within PGA1_c05230at 517.212 kb on + strand, within PGA1_c05230at 517.220 kb on - strand, within PGA1_c05230at 517.246 kb on + strand, within PGA1_c05230at 517.246 kb on + strand, within PGA1_c05230at 517.246 kb on + strand, within PGA1_c05230at 517.246 kb on + strand, within PGA1_c05230at 517.254 kb on - strand, within PGA1_c05230at 517.254 kb on - strand, within PGA1_c05230at 517.254 kb on - strand, within PGA1_c05230at 517.254 kb on - strand, within PGA1_c05230at 517.254 kb on - strand, within PGA1_c05230at 517.256 kb on - strand, within PGA1_c05230at 517.318 kb on + strand, within PGA1_c05230at 517.365 kb on + strand, within PGA1_c05230at 517.378 kb on - strand, within PGA1_c05230at 517.503 kb on - strand, within PGA1_c05230at 517.505 kb on + strand, within PGA1_c05230at 517.505 kb on + strand, within PGA1_c05230at 517.513 kb on - strand, within PGA1_c05230at 517.590 kb on - strand, within PGA1_c05230

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml
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514,562 - PGA1_c05210 0.12 +1.1
514,564 + PGA1_c05210 0.12 -0.6
514,584 + PGA1_c05210 0.14 -1.3
514,584 + PGA1_c05210 0.14 +2.7
514,592 - PGA1_c05210 0.14 -0.3
514,613 + PGA1_c05210 0.16 -0.3
514,621 - PGA1_c05210 0.17 +0.1
514,628 - PGA1_c05210 0.17 +0.8
514,656 + PGA1_c05210 0.20 -0.0
514,720 - PGA1_c05210 0.26 +1.3
514,720 - PGA1_c05210 0.26 -2.1
514,720 - PGA1_c05210 0.26 -0.2
514,758 - PGA1_c05210 0.29 -0.5
514,770 + PGA1_c05210 0.30 -0.1
514,770 + PGA1_c05210 0.30 +0.9
514,775 + PGA1_c05210 0.31 +0.6
514,778 - PGA1_c05210 0.31 -1.6
514,800 - PGA1_c05210 0.33 +0.1
514,850 + PGA1_c05210 0.37 -0.5
514,857 + PGA1_c05210 0.38 +1.6
514,891 - PGA1_c05210 0.41 +0.2
514,931 + PGA1_c05210 0.45 +0.3
514,962 - PGA1_c05210 0.47 -0.7
514,974 + PGA1_c05210 0.48 -1.7
515,029 - PGA1_c05210 0.53 +0.7
515,069 + PGA1_c05210 0.57 +0.5
515,195 + PGA1_c05210 0.68 +0.7
515,197 + PGA1_c05210 0.68 +0.1
515,203 - PGA1_c05210 0.69 -1.4
515,223 + PGA1_c05210 0.71 +0.2
515,226 - PGA1_c05210 0.71 -0.4
515,231 - PGA1_c05210 0.72 -0.6
515,277 + PGA1_c05210 0.76 +0.3
515,301 + PGA1_c05210 0.78 -0.3
515,301 + PGA1_c05210 0.78 -0.7
515,309 - PGA1_c05210 0.78 -1.1
515,309 - PGA1_c05210 0.78 +0.7
515,311 + PGA1_c05210 0.79 +0.4
515,398 - PGA1_c05210 0.86 -1.7
515,431 + PGA1_c05210 0.89 +1.0
515,445 + -1.9
515,446 + -0.4
515,499 - -0.5
515,506 + -0.5
515,506 + -0.0
515,506 + -1.3
515,506 + +1.6
515,506 + -0.5
515,506 + +1.5
515,506 + -0.5
515,506 + +1.1
515,514 - -0.3
515,514 - -1.1
515,514 - -0.0
515,516 + +0.7
515,533 + +0.2
515,554 - +0.7
515,614 + -1.6
515,633 + +2.1
515,642 + -0.3
515,719 + PGA1_c05220 0.15 -1.0
515,729 + PGA1_c05220 0.15 +0.4
515,729 + PGA1_c05220 0.15 -0.5
515,747 + PGA1_c05220 0.17 +0.3
515,750 - PGA1_c05220 0.17 +1.0
515,800 + PGA1_c05220 0.22 +0.4
515,862 + PGA1_c05220 0.27 -0.1
515,870 - PGA1_c05220 0.28 +0.7
515,882 + PGA1_c05220 0.29 -1.2
515,887 + PGA1_c05220 0.30 -1.5
515,887 + PGA1_c05220 0.30 -0.7
515,887 + PGA1_c05220 0.30 -0.9
515,887 + PGA1_c05220 0.30 +0.2
515,887 + PGA1_c05220 0.30 -0.7
515,887 + PGA1_c05220 0.30 -0.4
515,895 - PGA1_c05220 0.30 -1.3
515,895 - PGA1_c05220 0.30 -1.1
515,948 + PGA1_c05220 0.35 -0.9
515,953 + PGA1_c05220 0.35 -0.3
515,956 - PGA1_c05220 0.36 -0.1
516,004 + PGA1_c05220 0.40 -0.5
516,010 + PGA1_c05220 0.41 -1.7
516,018 - PGA1_c05220 0.41 -0.2
516,039 - PGA1_c05220 0.43 -0.2
516,077 + PGA1_c05220 0.47 -0.4
516,204 - PGA1_c05220 0.58 -0.4
516,209 - PGA1_c05220 0.58 -1.9
516,209 - PGA1_c05220 0.58 -0.0
516,219 + PGA1_c05220 0.59 -0.7
516,219 + PGA1_c05220 0.59 +0.1
516,257 + PGA1_c05220 0.63 -0.1
516,372 - PGA1_c05220 0.73 +0.3
516,431 + PGA1_c05220 0.78 -0.5
516,441 - PGA1_c05220 0.79 -1.5
516,587 + -1.7
516,592 + +0.7
516,711 - -0.4
516,751 + -0.5
516,768 + -0.4
516,783 + -0.7
516,783 - +0.3
516,791 - +0.5
516,815 + +0.3
516,829 + +0.7
516,837 - -2.5
516,945 - -0.4
516,958 - -0.1
516,962 + PGA1_c05230 0.10 -0.5
516,969 + PGA1_c05230 0.11 +1.3
516,970 - PGA1_c05230 0.11 -1.2
517,002 + PGA1_c05230 0.12 -0.7
517,002 + PGA1_c05230 0.12 +1.4
517,033 + PGA1_c05230 0.14 -1.9
517,041 - PGA1_c05230 0.15 +1.2
517,060 - PGA1_c05230 0.16 -0.8
517,070 - PGA1_c05230 0.16 +1.0
517,073 + PGA1_c05230 0.17 -0.8
517,073 + PGA1_c05230 0.17 -0.3
517,073 + PGA1_c05230 0.17 +0.5
517,091 + PGA1_c05230 0.18 -2.1
517,110 - PGA1_c05230 0.19 -1.9
517,173 + PGA1_c05230 0.22 -0.4
517,180 - PGA1_c05230 0.23 -1.3
517,198 - PGA1_c05230 0.24 +0.1
517,212 + PGA1_c05230 0.25 -2.3
517,212 + PGA1_c05230 0.25 +0.3
517,220 - PGA1_c05230 0.25 -0.3
517,246 + PGA1_c05230 0.27 +1.4
517,246 + PGA1_c05230 0.27 -0.5
517,246 + PGA1_c05230 0.27 -1.1
517,246 + PGA1_c05230 0.27 -1.8
517,254 - PGA1_c05230 0.27 -1.3
517,254 - PGA1_c05230 0.27 -1.0
517,254 - PGA1_c05230 0.27 +0.3
517,254 - PGA1_c05230 0.27 -1.0
517,254 - PGA1_c05230 0.27 +0.4
517,256 - PGA1_c05230 0.27 +1.4
517,318 + PGA1_c05230 0.31 +0.5
517,365 + PGA1_c05230 0.33 -0.0
517,378 - PGA1_c05230 0.34 -0.2
517,503 - PGA1_c05230 0.41 +0.5
517,505 + PGA1_c05230 0.41 -0.1
517,505 + PGA1_c05230 0.41 -0.6
517,513 - PGA1_c05230 0.42 +0.1
517,590 - PGA1_c05230 0.46 -0.8

Or see this region's nucleotide sequence