Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g48

Experiment: m.b. nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g47 and HP15_p187g48 are separated by 185 nucleotidesHP15_p187g48 and HP15_p187g49 are separated by 48 nucleotidesHP15_p187g49 and HP15_p187g50 are separated by 0 nucleotides HP15_p187g47: HP15_p187g47 - dTDP-glucose 4,6-dehydratase, at 41,132 to 42,205 _p187g47 HP15_p187g48: HP15_p187g48 - hypothetical protein, at 42,391 to 42,711 _p187g48 HP15_p187g49: HP15_p187g49 - dTDP-4-dehydrorhamnose reductase, at 42,760 to 43,134 _p187g49 HP15_p187g50: HP15_p187g50 - glucose-1-phosphate thymidylyltransferase 1, at 43,135 to 44,019 _p187g50 Position (kb) 42 43Strain fitness (log2 ratio) -2 -1 0 1 2at 41.392 kb on - strand, within HP15_p187g47at 41.405 kb on - strand, within HP15_p187g47at 41.440 kb on + strand, within HP15_p187g47at 41.442 kb on + strand, within HP15_p187g47at 41.442 kb on + strand, within HP15_p187g47at 41.448 kb on - strand, within HP15_p187g47at 41.448 kb on - strand, within HP15_p187g47at 41.450 kb on - strand, within HP15_p187g47at 41.450 kb on - strand, within HP15_p187g47at 41.450 kb on - strand, within HP15_p187g47at 41.460 kb on - strand, within HP15_p187g47at 41.473 kb on - strand, within HP15_p187g47at 41.536 kb on + strand, within HP15_p187g47at 41.536 kb on + strand, within HP15_p187g47at 41.536 kb on + strand, within HP15_p187g47at 41.539 kb on - strand, within HP15_p187g47at 41.544 kb on - strand, within HP15_p187g47at 41.545 kb on - strand, within HP15_p187g47at 41.577 kb on + strand, within HP15_p187g47at 41.579 kb on + strand, within HP15_p187g47at 41.593 kb on - strand, within HP15_p187g47at 41.612 kb on + strand, within HP15_p187g47at 41.620 kb on - strand, within HP15_p187g47at 41.641 kb on + strand, within HP15_p187g47at 41.654 kb on - strand, within HP15_p187g47at 41.668 kb on - strand, within HP15_p187g47at 41.687 kb on - strand, within HP15_p187g47at 41.693 kb on + strand, within HP15_p187g47at 41.827 kb on + strand, within HP15_p187g47at 41.827 kb on + strand, within HP15_p187g47at 41.827 kb on + strand, within HP15_p187g47at 41.829 kb on - strand, within HP15_p187g47at 41.835 kb on - strand, within HP15_p187g47at 41.840 kb on - strand, within HP15_p187g47at 41.842 kb on - strand, within HP15_p187g47at 41.853 kb on - strand, within HP15_p187g47at 41.865 kb on - strand, within HP15_p187g47at 41.899 kb on - strand, within HP15_p187g47at 41.900 kb on - strand, within HP15_p187g47at 41.921 kb on - strand, within HP15_p187g47at 42.028 kb on + strand, within HP15_p187g47at 42.028 kb on + strand, within HP15_p187g47at 42.034 kb on + strand, within HP15_p187g47at 42.116 kb on + strandat 42.124 kb on - strandat 42.127 kb on - strandat 42.133 kb on + strandat 42.141 kb on - strandat 42.195 kb on - strandat 42.276 kb on - strandat 42.301 kb on - strandat 42.323 kb on + strandat 42.357 kb on - strandat 42.365 kb on - strandat 42.372 kb on + strandat 42.385 kb on - strandat 42.390 kb on - strandat 42.401 kb on - strandat 42.419 kb on + strandat 42.425 kb on + strand, within HP15_p187g48at 42.429 kb on + strand, within HP15_p187g48at 42.469 kb on + strand, within HP15_p187g48at 42.469 kb on + strand, within HP15_p187g48at 42.477 kb on - strand, within HP15_p187g48at 42.477 kb on - strand, within HP15_p187g48at 42.477 kb on - strand, within HP15_p187g48at 42.477 kb on - strand, within HP15_p187g48at 42.530 kb on - strand, within HP15_p187g48at 42.546 kb on - strand, within HP15_p187g48at 42.571 kb on + strand, within HP15_p187g48at 42.579 kb on - strand, within HP15_p187g48at 42.608 kb on + strand, within HP15_p187g48at 42.608 kb on + strand, within HP15_p187g48at 42.701 kb on + strandat 42.709 kb on - strandat 42.709 kb on - strandat 42.776 kb on + strandat 42.784 kb on - strandat 42.827 kb on - strand, within HP15_p187g49at 42.876 kb on - strand, within HP15_p187g49at 42.896 kb on + strand, within HP15_p187g49at 42.936 kb on - strand, within HP15_p187g49at 42.988 kb on + strand, within HP15_p187g49at 43.004 kb on + strand, within HP15_p187g49at 43.053 kb on + strand, within HP15_p187g49at 43.053 kb on + strand, within HP15_p187g49at 43.061 kb on - strand, within HP15_p187g49at 43.071 kb on + strand, within HP15_p187g49at 43.117 kb on - strandat 43.142 kb on + strandat 43.142 kb on + strandat 43.150 kb on - strandat 43.173 kb on + strandat 43.196 kb on + strandat 43.204 kb on - strandat 43.386 kb on - strand, within HP15_p187g50at 43.393 kb on + strand, within HP15_p187g50at 43.396 kb on - strand, within HP15_p187g50at 43.401 kb on - strand, within HP15_p187g50at 43.401 kb on - strand, within HP15_p187g50at 43.436 kb on + strand, within HP15_p187g50at 43.436 kb on + strand, within HP15_p187g50at 43.436 kb on + strand, within HP15_p187g50at 43.442 kb on + strand, within HP15_p187g50at 43.442 kb on + strand, within HP15_p187g50at 43.444 kb on - strand, within HP15_p187g50at 43.450 kb on - strand, within HP15_p187g50at 43.450 kb on - strand, within HP15_p187g50at 43.461 kb on + strand, within HP15_p187g50at 43.472 kb on + strand, within HP15_p187g50at 43.480 kb on - strand, within HP15_p187g50at 43.543 kb on - strand, within HP15_p187g50at 43.568 kb on - strand, within HP15_p187g50at 43.601 kb on + strand, within HP15_p187g50at 43.649 kb on + strand, within HP15_p187g50

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM
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41,392 - HP15_p187g47 0.24 -0.7
41,405 - HP15_p187g47 0.25 -1.0
41,440 + HP15_p187g47 0.29 -0.2
41,442 + HP15_p187g47 0.29 -0.5
41,442 + HP15_p187g47 0.29 +0.6
41,448 - HP15_p187g47 0.29 -1.0
41,448 - HP15_p187g47 0.29 -0.5
41,450 - HP15_p187g47 0.30 +1.1
41,450 - HP15_p187g47 0.30 +0.1
41,450 - HP15_p187g47 0.30 -0.7
41,460 - HP15_p187g47 0.31 +0.4
41,473 - HP15_p187g47 0.32 -0.0
41,536 + HP15_p187g47 0.38 +0.5
41,536 + HP15_p187g47 0.38 -0.0
41,536 + HP15_p187g47 0.38 -0.0
41,539 - HP15_p187g47 0.38 +0.2
41,544 - HP15_p187g47 0.38 +1.8
41,545 - HP15_p187g47 0.38 -0.2
41,577 + HP15_p187g47 0.41 +0.3
41,579 + HP15_p187g47 0.42 -0.5
41,593 - HP15_p187g47 0.43 +0.9
41,612 + HP15_p187g47 0.45 +0.1
41,620 - HP15_p187g47 0.45 +0.1
41,641 + HP15_p187g47 0.47 +0.5
41,654 - HP15_p187g47 0.49 +0.4
41,668 - HP15_p187g47 0.50 -0.3
41,687 - HP15_p187g47 0.52 -0.5
41,693 + HP15_p187g47 0.52 -1.9
41,827 + HP15_p187g47 0.65 +0.1
41,827 + HP15_p187g47 0.65 +0.1
41,827 + HP15_p187g47 0.65 +0.9
41,829 - HP15_p187g47 0.65 -0.7
41,835 - HP15_p187g47 0.65 +0.5
41,840 - HP15_p187g47 0.66 +0.0
41,842 - HP15_p187g47 0.66 -0.5
41,853 - HP15_p187g47 0.67 +0.8
41,865 - HP15_p187g47 0.68 +0.1
41,899 - HP15_p187g47 0.71 +0.1
41,900 - HP15_p187g47 0.72 +0.3
41,921 - HP15_p187g47 0.73 -1.0
42,028 + HP15_p187g47 0.83 +0.1
42,028 + HP15_p187g47 0.83 -0.0
42,034 + HP15_p187g47 0.84 +0.2
42,116 + -0.6
42,124 - -0.5
42,127 - -0.4
42,133 + +0.1
42,141 - -2.5
42,195 - +0.1
42,276 - -0.9
42,301 - +0.1
42,323 + +1.0
42,357 - -0.1
42,365 - -0.9
42,372 + +0.3
42,385 - +0.3
42,390 - +0.7
42,401 - -1.1
42,419 + -1.9
42,425 + HP15_p187g48 0.11 +0.5
42,429 + HP15_p187g48 0.12 -0.2
42,469 + HP15_p187g48 0.24 +0.8
42,469 + HP15_p187g48 0.24 +0.5
42,477 - HP15_p187g48 0.27 +0.3
42,477 - HP15_p187g48 0.27 +0.2
42,477 - HP15_p187g48 0.27 +1.1
42,477 - HP15_p187g48 0.27 -0.5
42,530 - HP15_p187g48 0.43 +0.3
42,546 - HP15_p187g48 0.48 +1.2
42,571 + HP15_p187g48 0.56 +0.5
42,579 - HP15_p187g48 0.59 -0.3
42,608 + HP15_p187g48 0.68 +0.2
42,608 + HP15_p187g48 0.68 +0.2
42,701 + -0.3
42,709 - +1.1
42,709 - +0.1
42,776 + -0.5
42,784 - +0.4
42,827 - HP15_p187g49 0.18 -0.3
42,876 - HP15_p187g49 0.31 +0.1
42,896 + HP15_p187g49 0.36 +1.8
42,936 - HP15_p187g49 0.47 -0.8
42,988 + HP15_p187g49 0.61 +0.5
43,004 + HP15_p187g49 0.65 +0.4
43,053 + HP15_p187g49 0.78 +1.1
43,053 + HP15_p187g49 0.78 +0.2
43,061 - HP15_p187g49 0.80 +0.1
43,071 + HP15_p187g49 0.83 +0.6
43,117 - -0.3
43,142 + -0.9
43,142 + +0.3
43,150 - +0.3
43,173 + +0.7
43,196 + +0.5
43,204 - -0.1
43,386 - HP15_p187g50 0.28 +0.8
43,393 + HP15_p187g50 0.29 +1.1
43,396 - HP15_p187g50 0.29 -0.1
43,401 - HP15_p187g50 0.30 -0.4
43,401 - HP15_p187g50 0.30 +0.2
43,436 + HP15_p187g50 0.34 +1.2
43,436 + HP15_p187g50 0.34 +1.1
43,436 + HP15_p187g50 0.34 -0.0
43,442 + HP15_p187g50 0.35 -0.1
43,442 + HP15_p187g50 0.35 -0.6
43,444 - HP15_p187g50 0.35 -0.7
43,450 - HP15_p187g50 0.36 +0.1
43,450 - HP15_p187g50 0.36 -1.3
43,461 + HP15_p187g50 0.37 +0.2
43,472 + HP15_p187g50 0.38 -1.0
43,480 - HP15_p187g50 0.39 +0.1
43,543 - HP15_p187g50 0.46 -0.1
43,568 - HP15_p187g50 0.49 +0.2
43,601 + HP15_p187g50 0.53 -0.5
43,649 + HP15_p187g50 0.58 -0.5

Or see this region's nucleotide sequence