Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g21 and HP15_p187g22 are separated by 315 nucleotides HP15_p187g22 and HP15_p187g23 are separated by 245 nucleotides HP15_p187g23 and HP15_p187g24 overlap by 20 nucleotides HP15_p187g24 and HP15_p187g25 are separated by 153 nucleotides HP15_p187g25 and HP15_p187g26 are separated by 277 nucleotides
HP15_p187g21: HP15_p187g21 - hypothetical protein, at 19,348 to 19,467
_p187g21
HP15_p187g22: HP15_p187g22 - hypothetical protein, at 19,783 to 19,905
_p187g22
HP15_p187g23: HP15_p187g23 - hypothetical protein, at 20,151 to 20,303
_p187g23
HP15_p187g24: HP15_p187g24 - conserved hypothetical protein, at 20,284 to 20,472
_p187g24
HP15_p187g25: HP15_p187g25 - membrane protein, at 20,626 to 20,931
_p187g25
HP15_p187g26: HP15_p187g26 - hypothetical protein, at 21,209 to 21,370
_p187g26
Position (kb) 20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 19.288 kb on + strand at 19.302 kb on - strand at 19.316 kb on - strand at 19.338 kb on + strand at 19.346 kb on - strand at 19.346 kb on - strand at 19.346 kb on - strand at 19.352 kb on + strand at 19.508 kb on - strand at 19.572 kb on - strand at 19.605 kb on + strand at 19.605 kb on - strand at 19.645 kb on + strand at 19.645 kb on + strand at 19.645 kb on + strand at 19.653 kb on - strand at 19.653 kb on - strand at 19.653 kb on - strand at 19.757 kb on + strand at 19.765 kb on - strand at 19.809 kb on + strand, within HP15_p187g22 at 19.882 kb on + strand, within HP15_p187g22 at 19.883 kb on + strand, within HP15_p187g22 at 19.884 kb on + strand, within HP15_p187g22 at 19.888 kb on + strand, within HP15_p187g22 at 19.890 kb on + strand, within HP15_p187g22 at 19.900 kb on + strand at 19.900 kb on + strand at 19.907 kb on + strand at 19.915 kb on - strand at 19.917 kb on + strand at 19.942 kb on + strand at 19.972 kb on - strand at 19.990 kb on + strand at 19.995 kb on + strand at 20.003 kb on - strand at 20.019 kb on + strand at 20.022 kb on - strand at 20.116 kb on + strand at 20.150 kb on + strand at 20.183 kb on + strand, within HP15_p187g23 at 20.206 kb on + strand, within HP15_p187g23 at 20.260 kb on - strand, within HP15_p187g23 at 20.274 kb on - strand, within HP15_p187g23 at 20.400 kb on + strand, within HP15_p187g24 at 20.408 kb on - strand, within HP15_p187g24 at 20.444 kb on + strand, within HP15_p187g24 at 20.505 kb on - strand at 20.585 kb on - strand at 20.624 kb on - strand at 20.770 kb on + strand, within HP15_p187g25 at 20.770 kb on + strand, within HP15_p187g25 at 20.825 kb on + strand, within HP15_p187g25 at 20.862 kb on + strand, within HP15_p187g25 at 20.948 kb on - strand at 21.025 kb on - strand at 21.026 kb on + strand at 21.051 kb on + strand at 21.141 kb on + strand at 21.172 kb on + strand at 21.175 kb on - strand at 21.180 kb on - strand at 21.196 kb on - strand at 21.263 kb on - strand, within HP15_p187g26 at 21.265 kb on + strand, within HP15_p187g26 at 21.293 kb on + strand, within HP15_p187g26 at 21.311 kb on - strand, within HP15_p187g26 at 21.351 kb on + strand, within HP15_p187g26 at 21.356 kb on + strand at 21.364 kb on - strand at 21.382 kb on - strand at 21.431 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 19,288 + -1.8 19,302 - -0.1 19,316 - +0.1 19,338 + -0.8 19,346 - -0.6 19,346 - +0.2 19,346 - +0.1 19,352 + +0.3 19,508 - +1.3 19,572 - -2.1 19,605 + -0.4 19,605 - +0.9 19,645 + -0.8 19,645 + -0.0 19,645 + -2.5 19,653 - -0.8 19,653 - +0.2 19,653 - -1.6 19,757 + -0.1 19,765 - +0.3 19,809 + HP15_p187g22 0.21 -0.9 19,882 + HP15_p187g22 0.80 +0.6 19,883 + HP15_p187g22 0.81 -0.0 19,884 + HP15_p187g22 0.82 +1.3 19,888 + HP15_p187g22 0.85 +0.1 19,890 + HP15_p187g22 0.87 -0.1 19,900 + +1.1 19,900 + +0.6 19,907 + +0.1 19,915 - +0.2 19,917 + +0.3 19,942 + +0.5 19,972 - +0.2 19,990 + -0.2 19,995 + -0.6 20,003 - -1.8 20,019 + -0.1 20,022 - -1.0 20,116 + -0.1 20,150 + -0.5 20,183 + HP15_p187g23 0.21 +1.2 20,206 + HP15_p187g23 0.36 -0.9 20,260 - HP15_p187g23 0.71 -0.7 20,274 - HP15_p187g23 0.80 +1.3 20,400 + HP15_p187g24 0.61 -0.1 20,408 - HP15_p187g24 0.66 -0.3 20,444 + HP15_p187g24 0.85 -1.1 20,505 - -0.5 20,585 - +0.2 20,624 - +0.0 20,770 + HP15_p187g25 0.47 -0.2 20,770 + HP15_p187g25 0.47 +0.9 20,825 + HP15_p187g25 0.65 -0.9 20,862 + HP15_p187g25 0.77 -0.5 20,948 - +1.1 21,025 - +0.3 21,026 + -0.0 21,051 + +1.3 21,141 + -0.2 21,172 + -0.4 21,175 - +0.7 21,180 - -0.8 21,196 - -0.9 21,263 - HP15_p187g26 0.33 +0.3 21,265 + HP15_p187g26 0.35 +1.8 21,293 + HP15_p187g26 0.52 -0.2 21,311 - HP15_p187g26 0.63 -0.5 21,351 + HP15_p187g26 0.88 +0.5 21,356 + -0.5 21,364 - -1.3 21,382 - -0.7 21,431 - -0.8
Or see this region's nucleotide sequence