Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00430

Experiment: m.b. Phosphomycin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00420 and PGA1_c00430 are separated by 11 nucleotidesPGA1_c00430 and PGA1_c00440 are separated by 105 nucleotides PGA1_c00420: PGA1_c00420 - metallo-beta-lactamase-like protein, at 46,554 to 47,504 _c00420 PGA1_c00430: PGA1_c00430 - fumarylacetoacetase Fah, at 47,516 to 48,772 _c00430 PGA1_c00440: PGA1_c00440 - homogentisate 1,2-dioxygenase HmgA, at 48,878 to 50,239 _c00440 Position (kb) 47 48 49Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 46.518 kb on + strandat 46.531 kb on - strandat 46.531 kb on - strandat 46.557 kb on + strandat 46.565 kb on - strandat 46.565 kb on - strandat 46.597 kb on + strandat 46.597 kb on + strandat 46.597 kb on + strandat 46.597 kb on + strandat 46.597 kb on + strandat 46.602 kb on + strandat 46.605 kb on - strandat 46.605 kb on - strandat 46.605 kb on - strandat 46.605 kb on - strandat 46.605 kb on - strandat 46.629 kb on - strandat 46.631 kb on + strandat 46.646 kb on + strandat 46.664 kb on - strand, within PGA1_c00420at 46.692 kb on + strand, within PGA1_c00420at 46.700 kb on - strand, within PGA1_c00420at 46.702 kb on + strand, within PGA1_c00420at 46.715 kb on + strand, within PGA1_c00420at 46.728 kb on - strand, within PGA1_c00420at 46.769 kb on + strand, within PGA1_c00420at 46.808 kb on - strand, within PGA1_c00420at 46.909 kb on - strand, within PGA1_c00420at 46.998 kb on - strand, within PGA1_c00420at 47.012 kb on + strand, within PGA1_c00420at 47.025 kb on + strand, within PGA1_c00420at 47.025 kb on + strand, within PGA1_c00420at 47.033 kb on - strand, within PGA1_c00420at 47.068 kb on - strand, within PGA1_c00420at 47.100 kb on + strand, within PGA1_c00420at 47.126 kb on - strand, within PGA1_c00420at 47.126 kb on - strand, within PGA1_c00420at 47.160 kb on + strand, within PGA1_c00420at 47.168 kb on - strand, within PGA1_c00420at 47.268 kb on - strand, within PGA1_c00420at 47.279 kb on - strand, within PGA1_c00420at 47.289 kb on - strand, within PGA1_c00420at 47.349 kb on + strand, within PGA1_c00420at 47.350 kb on + strand, within PGA1_c00420at 47.350 kb on + strand, within PGA1_c00420at 47.358 kb on - strand, within PGA1_c00420at 47.425 kb on + strandat 47.428 kb on + strandat 47.447 kb on + strandat 47.447 kb on + strandat 47.472 kb on + strandat 47.502 kb on - strandat 47.531 kb on - strandat 47.533 kb on + strandat 47.533 kb on + strandat 47.533 kb on + strandat 47.541 kb on - strandat 47.541 kb on - strandat 47.541 kb on - strandat 47.543 kb on + strandat 47.548 kb on + strandat 47.551 kb on - strandat 47.551 kb on - strandat 47.551 kb on - strandat 47.556 kb on - strandat 47.587 kb on - strandat 47.593 kb on - strandat 47.604 kb on + strandat 47.655 kb on - strand, within PGA1_c00430at 47.682 kb on + strand, within PGA1_c00430at 47.703 kb on + strand, within PGA1_c00430at 47.712 kb on - strand, within PGA1_c00430at 47.714 kb on + strand, within PGA1_c00430at 47.774 kb on + strand, within PGA1_c00430at 47.862 kb on - strand, within PGA1_c00430at 47.869 kb on + strand, within PGA1_c00430at 47.887 kb on + strand, within PGA1_c00430at 47.925 kb on - strand, within PGA1_c00430at 48.002 kb on - strand, within PGA1_c00430at 48.059 kb on + strand, within PGA1_c00430at 48.067 kb on - strand, within PGA1_c00430at 48.067 kb on - strand, within PGA1_c00430at 48.067 kb on - strand, within PGA1_c00430at 48.161 kb on - strand, within PGA1_c00430at 48.249 kb on - strand, within PGA1_c00430at 48.285 kb on - strand, within PGA1_c00430at 48.287 kb on + strand, within PGA1_c00430at 48.356 kb on - strand, within PGA1_c00430at 48.367 kb on + strand, within PGA1_c00430at 48.380 kb on + strand, within PGA1_c00430at 48.390 kb on + strand, within PGA1_c00430at 48.405 kb on - strand, within PGA1_c00430at 48.523 kb on + strand, within PGA1_c00430at 48.523 kb on + strand, within PGA1_c00430at 48.526 kb on - strand, within PGA1_c00430at 48.559 kb on + strand, within PGA1_c00430at 48.591 kb on - strand, within PGA1_c00430at 48.660 kb on + strandat 48.704 kb on - strandat 48.717 kb on + strandat 48.730 kb on - strandat 48.751 kb on + strandat 48.851 kb on - strandat 48.856 kb on - strandat 48.982 kb on - strandat 49.017 kb on + strand, within PGA1_c00440at 49.093 kb on + strand, within PGA1_c00440at 49.093 kb on + strand, within PGA1_c00440at 49.101 kb on - strand, within PGA1_c00440at 49.101 kb on - strand, within PGA1_c00440at 49.108 kb on + strand, within PGA1_c00440at 49.116 kb on - strand, within PGA1_c00440at 49.130 kb on + strand, within PGA1_c00440at 49.138 kb on - strand, within PGA1_c00440at 49.138 kb on - strand, within PGA1_c00440at 49.138 kb on - strand, within PGA1_c00440at 49.138 kb on - strand, within PGA1_c00440at 49.142 kb on + strand, within PGA1_c00440at 49.151 kb on - strand, within PGA1_c00440at 49.174 kb on + strand, within PGA1_c00440at 49.229 kb on + strand, within PGA1_c00440at 49.269 kb on + strand, within PGA1_c00440at 49.269 kb on + strand, within PGA1_c00440at 49.269 kb on + strand, within PGA1_c00440at 49.269 kb on + strand, within PGA1_c00440at 49.274 kb on + strand, within PGA1_c00440at 49.277 kb on - strand, within PGA1_c00440at 49.279 kb on + strand, within PGA1_c00440at 49.279 kb on + strand, within PGA1_c00440at 49.282 kb on - strand, within PGA1_c00440at 49.287 kb on - strand, within PGA1_c00440at 49.287 kb on - strand, within PGA1_c00440at 49.287 kb on - strand, within PGA1_c00440at 49.333 kb on + strand, within PGA1_c00440at 49.338 kb on + strand, within PGA1_c00440at 49.356 kb on - strand, within PGA1_c00440at 49.356 kb on - strand, within PGA1_c00440at 49.451 kb on + strand, within PGA1_c00440at 49.453 kb on + strand, within PGA1_c00440at 49.453 kb on + strand, within PGA1_c00440at 49.506 kb on - strand, within PGA1_c00440at 49.549 kb on + strand, within PGA1_c00440at 49.549 kb on + strand, within PGA1_c00440at 49.549 kb on + strand, within PGA1_c00440at 49.549 kb on + strand, within PGA1_c00440at 49.549 kb on + strand, within PGA1_c00440at 49.557 kb on - strand, within PGA1_c00440at 49.557 kb on - strand, within PGA1_c00440at 49.600 kb on - strand, within PGA1_c00440at 49.621 kb on - strand, within PGA1_c00440at 49.629 kb on + strand, within PGA1_c00440at 49.633 kb on + strand, within PGA1_c00440at 49.637 kb on - strand, within PGA1_c00440at 49.637 kb on - strand, within PGA1_c00440at 49.693 kb on + strand, within PGA1_c00440at 49.698 kb on - strand, within PGA1_c00440at 49.712 kb on + strand, within PGA1_c00440at 49.716 kb on + strand, within PGA1_c00440at 49.771 kb on - strand, within PGA1_c00440

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml
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46,518 + -0.7
46,531 - +1.7
46,531 - -1.7
46,557 + +0.4
46,565 - -1.3
46,565 - +1.6
46,597 + -0.7
46,597 + +0.5
46,597 + -0.2
46,597 + +0.3
46,597 + +0.1
46,602 + -0.5
46,605 - +0.5
46,605 - +0.0
46,605 - +1.9
46,605 - -2.8
46,605 - +0.4
46,629 - +0.4
46,631 + -0.3
46,646 + +0.7
46,664 - PGA1_c00420 0.12 -1.6
46,692 + PGA1_c00420 0.15 +0.7
46,700 - PGA1_c00420 0.15 -0.1
46,702 + PGA1_c00420 0.16 -0.6
46,715 + PGA1_c00420 0.17 +0.2
46,728 - PGA1_c00420 0.18 -0.3
46,769 + PGA1_c00420 0.23 -0.9
46,808 - PGA1_c00420 0.27 -0.0
46,909 - PGA1_c00420 0.37 +0.3
46,998 - PGA1_c00420 0.47 +0.1
47,012 + PGA1_c00420 0.48 +1.3
47,025 + PGA1_c00420 0.50 +0.4
47,025 + PGA1_c00420 0.50 +0.7
47,033 - PGA1_c00420 0.50 +0.5
47,068 - PGA1_c00420 0.54 -0.1
47,100 + PGA1_c00420 0.57 +0.6
47,126 - PGA1_c00420 0.60 +1.3
47,126 - PGA1_c00420 0.60 -0.1
47,160 + PGA1_c00420 0.64 +0.1
47,168 - PGA1_c00420 0.65 +0.1
47,268 - PGA1_c00420 0.75 +0.5
47,279 - PGA1_c00420 0.76 -1.1
47,289 - PGA1_c00420 0.77 -2.7
47,349 + PGA1_c00420 0.84 +0.7
47,350 + PGA1_c00420 0.84 +0.2
47,350 + PGA1_c00420 0.84 +0.2
47,358 - PGA1_c00420 0.85 +0.7
47,425 + -0.3
47,428 + +0.2
47,447 + -0.0
47,447 + -1.4
47,472 + -0.1
47,502 - +0.2
47,531 - +0.3
47,533 + -0.3
47,533 + -0.3
47,533 + -0.1
47,541 - +0.5
47,541 - -0.8
47,541 - -0.6
47,543 + +1.0
47,548 + +0.3
47,551 - +0.7
47,551 - +1.3
47,551 - -1.3
47,556 - -0.8
47,587 - -0.4
47,593 - -0.3
47,604 + -0.1
47,655 - PGA1_c00430 0.11 -1.8
47,682 + PGA1_c00430 0.13 +0.5
47,703 + PGA1_c00430 0.15 +0.1
47,712 - PGA1_c00430 0.16 -0.9
47,714 + PGA1_c00430 0.16 +0.0
47,774 + PGA1_c00430 0.21 -0.7
47,862 - PGA1_c00430 0.28 -0.3
47,869 + PGA1_c00430 0.28 -0.1
47,887 + PGA1_c00430 0.30 -0.3
47,925 - PGA1_c00430 0.33 +0.2
48,002 - PGA1_c00430 0.39 +2.2
48,059 + PGA1_c00430 0.43 -0.2
48,067 - PGA1_c00430 0.44 -1.0
48,067 - PGA1_c00430 0.44 -0.1
48,067 - PGA1_c00430 0.44 -0.3
48,161 - PGA1_c00430 0.51 +1.3
48,249 - PGA1_c00430 0.58 -0.6
48,285 - PGA1_c00430 0.61 -0.4
48,287 + PGA1_c00430 0.61 +0.9
48,356 - PGA1_c00430 0.67 +0.5
48,367 + PGA1_c00430 0.68 +0.2
48,380 + PGA1_c00430 0.69 -0.8
48,390 + PGA1_c00430 0.70 -0.2
48,405 - PGA1_c00430 0.71 -2.8
48,523 + PGA1_c00430 0.80 +0.9
48,523 + PGA1_c00430 0.80 -2.3
48,526 - PGA1_c00430 0.80 -0.6
48,559 + PGA1_c00430 0.83 +0.0
48,591 - PGA1_c00430 0.86 -0.3
48,660 + +0.7
48,704 - -0.4
48,717 + -1.0
48,730 - -0.4
48,751 + -1.3
48,851 - -0.8
48,856 - +1.0
48,982 - -0.4
49,017 + PGA1_c00440 0.10 -0.8
49,093 + PGA1_c00440 0.16 +0.4
49,093 + PGA1_c00440 0.16 -0.4
49,101 - PGA1_c00440 0.16 -0.8
49,101 - PGA1_c00440 0.16 +0.0
49,108 + PGA1_c00440 0.17 +0.9
49,116 - PGA1_c00440 0.17 +1.5
49,130 + PGA1_c00440 0.19 +1.2
49,138 - PGA1_c00440 0.19 +0.5
49,138 - PGA1_c00440 0.19 +0.7
49,138 - PGA1_c00440 0.19 +0.3
49,138 - PGA1_c00440 0.19 +0.1
49,142 + PGA1_c00440 0.19 +0.0
49,151 - PGA1_c00440 0.20 +0.3
49,174 + PGA1_c00440 0.22 -0.1
49,229 + PGA1_c00440 0.26 +0.4
49,269 + PGA1_c00440 0.29 -0.5
49,269 + PGA1_c00440 0.29 -1.8
49,269 + PGA1_c00440 0.29 +0.9
49,269 + PGA1_c00440 0.29 -1.8
49,274 + PGA1_c00440 0.29 -0.1
49,277 - PGA1_c00440 0.29 +0.5
49,279 + PGA1_c00440 0.29 +2.3
49,279 + PGA1_c00440 0.29 +0.7
49,282 - PGA1_c00440 0.30 -0.8
49,287 - PGA1_c00440 0.30 -0.5
49,287 - PGA1_c00440 0.30 -0.3
49,287 - PGA1_c00440 0.30 +0.2
49,333 + PGA1_c00440 0.33 -0.2
49,338 + PGA1_c00440 0.34 -0.0
49,356 - PGA1_c00440 0.35 +0.1
49,356 - PGA1_c00440 0.35 -1.0
49,451 + PGA1_c00440 0.42 +0.2
49,453 + PGA1_c00440 0.42 +1.0
49,453 + PGA1_c00440 0.42 -0.4
49,506 - PGA1_c00440 0.46 +0.0
49,549 + PGA1_c00440 0.49 -1.1
49,549 + PGA1_c00440 0.49 +1.2
49,549 + PGA1_c00440 0.49 +0.2
49,549 + PGA1_c00440 0.49 +0.6
49,549 + PGA1_c00440 0.49 +0.0
49,557 - PGA1_c00440 0.50 -1.1
49,557 - PGA1_c00440 0.50 +0.1
49,600 - PGA1_c00440 0.53 -1.1
49,621 - PGA1_c00440 0.55 -0.4
49,629 + PGA1_c00440 0.55 +0.4
49,633 + PGA1_c00440 0.55 -1.1
49,637 - PGA1_c00440 0.56 -0.5
49,637 - PGA1_c00440 0.56 -0.5
49,693 + PGA1_c00440 0.60 -0.8
49,698 - PGA1_c00440 0.60 -0.5
49,712 + PGA1_c00440 0.61 +1.7
49,716 + PGA1_c00440 0.62 -0.6
49,771 - PGA1_c00440 0.66 -0.5

Or see this region's nucleotide sequence