Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g49 and HP15_p42g50 overlap by 4 nucleotides HP15_p42g50 and HP15_p42g51 are separated by 188 nucleotides HP15_p42g51 and HP15_p42g52 are separated by 25 nucleotides
HP15_p42g49: HP15_p42g49 - type IV secretion/conjugal transfer ATPase, VirB4 family, at 38,068 to 40,608
_p42g49
HP15_p42g50: HP15_p42g50 - conjugal transfer protein TrbD-like protein, at 40,605 to 40,730
_p42g50
HP15_p42g51: HP15_p42g51 - prepilin, at 40,919 to 41,344
_p42g51
HP15_p42g52: HP15_p42g52 - type II secretion system protein E, at 41,370 to 42,329
_p42g52
Position (kb) 40
41 Strain fitness (log2 ratio) -2
-1
0
1 at 39.669 kb on - strand, within HP15_p42g49 at 39.703 kb on + strand, within HP15_p42g49 at 39.704 kb on + strand, within HP15_p42g49 at 39.739 kb on - strand, within HP15_p42g49 at 39.752 kb on + strand, within HP15_p42g49 at 39.759 kb on - strand, within HP15_p42g49 at 39.801 kb on + strand, within HP15_p42g49 at 39.809 kb on - strand, within HP15_p42g49 at 39.809 kb on - strand, within HP15_p42g49 at 39.856 kb on - strand, within HP15_p42g49 at 39.865 kb on + strand, within HP15_p42g49 at 39.875 kb on + strand, within HP15_p42g49 at 39.880 kb on + strand, within HP15_p42g49 at 39.883 kb on - strand, within HP15_p42g49 at 39.941 kb on - strand, within HP15_p42g49 at 40.127 kb on + strand, within HP15_p42g49 at 40.137 kb on + strand, within HP15_p42g49 at 40.144 kb on + strand, within HP15_p42g49 at 40.149 kb on + strand, within HP15_p42g49 at 40.160 kb on + strand, within HP15_p42g49 at 40.160 kb on + strand, within HP15_p42g49 at 40.162 kb on + strand, within HP15_p42g49 at 40.162 kb on - strand, within HP15_p42g49 at 40.168 kb on - strand, within HP15_p42g49 at 40.168 kb on - strand, within HP15_p42g49 at 40.170 kb on - strand, within HP15_p42g49 at 40.178 kb on - strand, within HP15_p42g49 at 40.222 kb on + strand, within HP15_p42g49 at 40.276 kb on + strand, within HP15_p42g49 at 40.283 kb on + strand, within HP15_p42g49 at 40.316 kb on - strand, within HP15_p42g49 at 40.318 kb on + strand, within HP15_p42g49 at 40.365 kb on - strand at 40.388 kb on + strand at 40.407 kb on + strand at 40.431 kb on + strand at 40.431 kb on + strand at 40.439 kb on - strand at 40.439 kb on - strand at 40.439 kb on - strand at 40.444 kb on + strand at 40.694 kb on + strand, within HP15_p42g50 at 40.717 kb on - strand, within HP15_p42g50 at 40.717 kb on - strand, within HP15_p42g50 at 40.717 kb on - strand, within HP15_p42g50 at 40.753 kb on + strand at 40.763 kb on + strand at 40.763 kb on + strand at 40.778 kb on + strand at 40.778 kb on + strand at 40.786 kb on - strand at 40.786 kb on - strand at 40.826 kb on + strand at 40.826 kb on + strand at 40.828 kb on + strand at 40.836 kb on + strand at 40.893 kb on + strand at 40.893 kb on - strand at 40.924 kb on - strand at 40.959 kb on + strand at 40.967 kb on - strand, within HP15_p42g51 at 40.980 kb on - strand, within HP15_p42g51 at 41.021 kb on + strand, within HP15_p42g51 at 41.055 kb on + strand, within HP15_p42g51 at 41.099 kb on + strand, within HP15_p42g51 at 41.114 kb on + strand, within HP15_p42g51 at 41.163 kb on - strand, within HP15_p42g51 at 41.164 kb on + strand, within HP15_p42g51 at 41.164 kb on + strand, within HP15_p42g51 at 41.164 kb on + strand, within HP15_p42g51 at 41.164 kb on + strand, within HP15_p42g51 at 41.169 kb on + strand, within HP15_p42g51 at 41.172 kb on - strand, within HP15_p42g51 at 41.172 kb on - strand, within HP15_p42g51 at 41.215 kb on + strand, within HP15_p42g51 at 41.223 kb on - strand, within HP15_p42g51 at 41.249 kb on + strand, within HP15_p42g51 at 41.249 kb on - strand, within HP15_p42g51 at 41.259 kb on - strand, within HP15_p42g51 at 41.265 kb on + strand, within HP15_p42g51 at 41.287 kb on + strand, within HP15_p42g51 at 41.287 kb on + strand, within HP15_p42g51 at 41.287 kb on + strand, within HP15_p42g51 at 41.292 kb on + strand, within HP15_p42g51 at 41.292 kb on + strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.295 kb on - strand, within HP15_p42g51 at 41.310 kb on + strand at 41.319 kb on - strand at 41.334 kb on - strand at 41.388 kb on + strand at 41.388 kb on + strand at 41.396 kb on - strand at 41.396 kb on - strand at 41.422 kb on - strand at 41.464 kb on + strand at 41.469 kb on + strand, within HP15_p42g52 at 41.547 kb on + strand, within HP15_p42g52 at 41.547 kb on + strand, within HP15_p42g52 at 41.552 kb on + strand, within HP15_p42g52 at 41.557 kb on + strand, within HP15_p42g52 at 41.625 kb on + strand, within HP15_p42g52 at 41.625 kb on + strand, within HP15_p42g52 at 41.625 kb on + strand, within HP15_p42g52 at 41.660 kb on + strand, within HP15_p42g52 at 41.660 kb on + strand, within HP15_p42g52 at 41.660 kb on + strand, within HP15_p42g52 at 41.660 kb on + strand, within HP15_p42g52 at 41.671 kb on + strand, within HP15_p42g52 at 41.714 kb on + strand, within HP15_p42g52 at 41.714 kb on + strand, within HP15_p42g52 at 41.714 kb on + strand, within HP15_p42g52 at 41.714 kb on + strand, within HP15_p42g52 at 41.714 kb on + strand, within HP15_p42g52 at 41.725 kb on + strand, within HP15_p42g52
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 39,669 - HP15_p42g49 0.63 +1.7 39,703 + HP15_p42g49 0.64 +0.4 39,704 + HP15_p42g49 0.64 +0.6 39,739 - HP15_p42g49 0.66 +0.2 39,752 + HP15_p42g49 0.66 -1.3 39,759 - HP15_p42g49 0.67 +0.7 39,801 + HP15_p42g49 0.68 +0.5 39,809 - HP15_p42g49 0.69 +0.6 39,809 - HP15_p42g49 0.69 +0.2 39,856 - HP15_p42g49 0.70 -0.2 39,865 + HP15_p42g49 0.71 -0.7 39,875 + HP15_p42g49 0.71 -0.0 39,880 + HP15_p42g49 0.71 -0.3 39,883 - HP15_p42g49 0.71 -1.9 39,941 - HP15_p42g49 0.74 +1.0 40,127 + HP15_p42g49 0.81 -0.0 40,137 + HP15_p42g49 0.81 +1.2 40,144 + HP15_p42g49 0.82 -0.7 40,149 + HP15_p42g49 0.82 +0.3 40,160 + HP15_p42g49 0.82 -0.9 40,160 + HP15_p42g49 0.82 -0.1 40,162 + HP15_p42g49 0.82 -0.0 40,162 - HP15_p42g49 0.82 +0.7 40,168 - HP15_p42g49 0.83 -1.0 40,168 - HP15_p42g49 0.83 +0.4 40,170 - HP15_p42g49 0.83 -0.3 40,178 - HP15_p42g49 0.83 +0.4 40,222 + HP15_p42g49 0.85 +0.5 40,276 + HP15_p42g49 0.87 +0.8 40,283 + HP15_p42g49 0.87 -0.0 40,316 - HP15_p42g49 0.88 -0.9 40,318 + HP15_p42g49 0.89 -0.7 40,365 - +0.1 40,388 + -0.9 40,407 + +0.0 40,431 + -0.4 40,431 + +0.3 40,439 - -0.1 40,439 - -1.9 40,439 - -0.1 40,444 + +0.7 40,694 + HP15_p42g50 0.71 -0.3 40,717 - HP15_p42g50 0.89 -0.5 40,717 - HP15_p42g50 0.89 -1.3 40,717 - HP15_p42g50 0.89 +0.1 40,753 + +0.2 40,763 + -0.2 40,763 + +0.2 40,778 + +0.6 40,778 + -0.6 40,786 - -0.0 40,786 - -0.5 40,826 + -0.0 40,826 + -0.6 40,828 + +1.1 40,836 + -1.1 40,893 + -0.3 40,893 - +0.2 40,924 - -1.2 40,959 + +1.7 40,967 - HP15_p42g51 0.11 -0.5 40,980 - HP15_p42g51 0.14 -0.9 41,021 + HP15_p42g51 0.24 -1.1 41,055 + HP15_p42g51 0.32 -0.2 41,099 + HP15_p42g51 0.42 +1.4 41,114 + HP15_p42g51 0.46 -0.3 41,163 - HP15_p42g51 0.57 +1.5 41,164 + HP15_p42g51 0.58 -0.0 41,164 + HP15_p42g51 0.58 -0.2 41,164 + HP15_p42g51 0.58 -0.6 41,164 + HP15_p42g51 0.58 -1.1 41,169 + HP15_p42g51 0.59 +0.8 41,172 - HP15_p42g51 0.59 +1.1 41,172 - HP15_p42g51 0.59 -0.9 41,215 + HP15_p42g51 0.69 +1.3 41,223 - HP15_p42g51 0.71 -0.0 41,249 + HP15_p42g51 0.77 +0.9 41,249 - HP15_p42g51 0.77 -0.6 41,259 - HP15_p42g51 0.80 -0.3 41,265 + HP15_p42g51 0.81 -0.4 41,287 + HP15_p42g51 0.86 -0.4 41,287 + HP15_p42g51 0.86 +0.3 41,287 + HP15_p42g51 0.86 +0.1 41,292 + HP15_p42g51 0.88 -1.7 41,292 + HP15_p42g51 0.88 +0.6 41,295 - HP15_p42g51 0.88 -0.4 41,295 - HP15_p42g51 0.88 -0.0 41,295 - HP15_p42g51 0.88 -0.9 41,295 - HP15_p42g51 0.88 +0.0 41,295 - HP15_p42g51 0.88 -0.2 41,295 - HP15_p42g51 0.88 +0.1 41,295 - HP15_p42g51 0.88 +0.3 41,295 - HP15_p42g51 0.88 -0.2 41,310 + +0.0 41,319 - -0.9 41,334 - +0.0 41,388 + +0.2 41,388 + -1.4 41,396 - +0.1 41,396 - +0.9 41,422 - -1.0 41,464 + -0.1 41,469 + HP15_p42g52 0.10 +0.3 41,547 + HP15_p42g52 0.18 -0.3 41,547 + HP15_p42g52 0.18 +0.6 41,552 + HP15_p42g52 0.19 -1.4 41,557 + HP15_p42g52 0.19 -0.2 41,625 + HP15_p42g52 0.27 +0.1 41,625 + HP15_p42g52 0.27 -0.5 41,625 + HP15_p42g52 0.27 -0.3 41,660 + HP15_p42g52 0.30 +0.1 41,660 + HP15_p42g52 0.30 +0.4 41,660 + HP15_p42g52 0.30 +0.2 41,660 + HP15_p42g52 0.30 -0.9 41,671 + HP15_p42g52 0.31 -0.1 41,714 + HP15_p42g52 0.36 +0.3 41,714 + HP15_p42g52 0.36 +0.2 41,714 + HP15_p42g52 0.36 +0.8 41,714 + HP15_p42g52 0.36 -0.5 41,714 + HP15_p42g52 0.36 +1.5 41,725 + HP15_p42g52 0.37 -0.5
Or see this region's nucleotide sequence