Experiment: m.b. Phosphomycin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03940 and PGA1_c03950 are separated by 128 nucleotides PGA1_c03950 and PGA1_c03960 are separated by 0 nucleotides
PGA1_c03940: PGA1_c03940 - putative permease protein, at 380,698 to 381,534
_c03940
PGA1_c03950: PGA1_c03950 - putative permease protein, at 381,663 to 382,757
_c03950
PGA1_c03960: PGA1_c03960 - ribose import ATP-binding protein RbsA, at 382,758 to 384,287
_c03960
Position (kb) 381
382
383 Strain fitness (log2 ratio) -1
0
1
2
3 at 380.665 kb on + strand at 380.665 kb on + strand at 380.716 kb on + strand at 380.716 kb on + strand at 380.729 kb on + strand at 380.777 kb on + strand at 380.783 kb on + strand, within PGA1_c03940 at 380.803 kb on + strand, within PGA1_c03940 at 380.861 kb on + strand, within PGA1_c03940 at 380.960 kb on + strand, within PGA1_c03940 at 380.960 kb on + strand, within PGA1_c03940 at 380.968 kb on - strand, within PGA1_c03940 at 380.980 kb on + strand, within PGA1_c03940 at 381.110 kb on - strand, within PGA1_c03940 at 381.179 kb on + strand, within PGA1_c03940 at 381.183 kb on - strand, within PGA1_c03940 at 381.188 kb on + strand, within PGA1_c03940 at 381.276 kb on + strand, within PGA1_c03940 at 381.290 kb on + strand, within PGA1_c03940 at 381.290 kb on + strand, within PGA1_c03940 at 381.298 kb on - strand, within PGA1_c03940 at 381.314 kb on - strand, within PGA1_c03940 at 381.326 kb on + strand, within PGA1_c03940 at 381.339 kb on - strand, within PGA1_c03940 at 381.352 kb on + strand, within PGA1_c03940 at 381.391 kb on - strand, within PGA1_c03940 at 381.514 kb on + strand at 381.560 kb on + strand at 381.577 kb on + strand at 381.585 kb on - strand at 381.639 kb on - strand at 381.651 kb on - strand at 381.681 kb on - strand at 381.683 kb on + strand at 381.691 kb on - strand at 381.717 kb on - strand at 381.717 kb on - strand at 381.741 kb on - strand at 381.854 kb on + strand, within PGA1_c03950 at 381.881 kb on - strand, within PGA1_c03950 at 381.895 kb on - strand, within PGA1_c03950 at 381.961 kb on - strand, within PGA1_c03950 at 382.012 kb on - strand, within PGA1_c03950 at 382.250 kb on - strand, within PGA1_c03950 at 382.314 kb on - strand, within PGA1_c03950 at 382.345 kb on - strand, within PGA1_c03950 at 382.359 kb on - strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.413 kb on - strand, within PGA1_c03950 at 382.475 kb on + strand, within PGA1_c03950 at 382.483 kb on - strand, within PGA1_c03950 at 382.488 kb on + strand, within PGA1_c03950 at 382.494 kb on + strand, within PGA1_c03950 at 382.494 kb on + strand, within PGA1_c03950 at 382.543 kb on + strand, within PGA1_c03950 at 382.546 kb on - strand, within PGA1_c03950 at 382.576 kb on + strand, within PGA1_c03950 at 382.588 kb on + strand, within PGA1_c03950 at 382.599 kb on + strand, within PGA1_c03950 at 382.606 kb on + strand, within PGA1_c03950 at 382.674 kb on + strand at 382.704 kb on - strand at 382.708 kb on - strand at 382.746 kb on + strand at 382.777 kb on + strand at 382.783 kb on + strand at 382.783 kb on + strand at 382.783 kb on + strand at 382.791 kb on - strand at 383.012 kb on + strand, within PGA1_c03960 at 383.132 kb on + strand, within PGA1_c03960 at 383.140 kb on - strand, within PGA1_c03960 at 383.178 kb on + strand, within PGA1_c03960 at 383.178 kb on + strand, within PGA1_c03960 at 383.180 kb on + strand, within PGA1_c03960 at 383.188 kb on - strand, within PGA1_c03960 at 383.235 kb on + strand, within PGA1_c03960 at 383.243 kb on - strand, within PGA1_c03960 at 383.243 kb on - strand, within PGA1_c03960 at 383.352 kb on + strand, within PGA1_c03960 at 383.355 kb on - strand, within PGA1_c03960 at 383.367 kb on - strand, within PGA1_c03960 at 383.367 kb on - strand, within PGA1_c03960 at 383.406 kb on + strand, within PGA1_c03960 at 383.414 kb on - strand, within PGA1_c03960 at 383.476 kb on + strand, within PGA1_c03960 at 383.476 kb on + strand, within PGA1_c03960 at 383.484 kb on - strand, within PGA1_c03960 at 383.494 kb on + strand, within PGA1_c03960 at 383.502 kb on - strand, within PGA1_c03960 at 383.556 kb on + strand, within PGA1_c03960 at 383.564 kb on + strand, within PGA1_c03960 at 383.572 kb on - strand, within PGA1_c03960 at 383.631 kb on + strand, within PGA1_c03960 at 383.639 kb on - strand, within PGA1_c03960 at 383.687 kb on + strand, within PGA1_c03960 at 383.695 kb on - strand, within PGA1_c03960 at 383.695 kb on - strand, within PGA1_c03960 at 383.695 kb on - strand, within PGA1_c03960 at 383.697 kb on + strand, within PGA1_c03960 at 383.730 kb on - strand, within PGA1_c03960 at 383.733 kb on + strand, within PGA1_c03960 at 383.748 kb on - strand, within PGA1_c03960 at 383.756 kb on - strand, within PGA1_c03960
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml remove 380,665 + -0.9 380,665 + +0.3 380,716 + +1.6 380,716 + +1.2 380,729 + +2.2 380,777 + +2.8 380,783 + PGA1_c03940 0.10 +0.4 380,803 + PGA1_c03940 0.13 +1.8 380,861 + PGA1_c03940 0.19 -0.1 380,960 + PGA1_c03940 0.31 +1.1 380,960 + PGA1_c03940 0.31 +1.5 380,968 - PGA1_c03940 0.32 +2.1 380,980 + PGA1_c03940 0.34 +0.8 381,110 - PGA1_c03940 0.49 +0.3 381,179 + PGA1_c03940 0.57 +1.9 381,183 - PGA1_c03940 0.58 +0.1 381,188 + PGA1_c03940 0.59 +1.1 381,276 + PGA1_c03940 0.69 +1.2 381,290 + PGA1_c03940 0.71 +1.4 381,290 + PGA1_c03940 0.71 +2.7 381,298 - PGA1_c03940 0.72 +2.3 381,314 - PGA1_c03940 0.74 +0.7 381,326 + PGA1_c03940 0.75 +1.1 381,339 - PGA1_c03940 0.77 +0.5 381,352 + PGA1_c03940 0.78 +1.6 381,391 - PGA1_c03940 0.83 +1.5 381,514 + +1.4 381,560 + +1.5 381,577 + -0.5 381,585 - +0.7 381,639 - +1.3 381,651 - +0.9 381,681 - +0.5 381,683 + +1.9 381,691 - +0.4 381,717 - +0.7 381,717 - +0.6 381,741 - +0.0 381,854 + PGA1_c03950 0.17 +1.2 381,881 - PGA1_c03950 0.20 +1.5 381,895 - PGA1_c03950 0.21 +1.1 381,961 - PGA1_c03950 0.27 +1.2 382,012 - PGA1_c03950 0.32 +0.3 382,250 - PGA1_c03950 0.54 +2.5 382,314 - PGA1_c03950 0.59 +0.5 382,345 - PGA1_c03950 0.62 +0.9 382,359 - PGA1_c03950 0.64 +0.6 382,390 + PGA1_c03950 0.66 +0.5 382,390 + PGA1_c03950 0.66 +1.5 382,390 + PGA1_c03950 0.66 +1.7 382,390 + PGA1_c03950 0.66 +1.6 382,390 + PGA1_c03950 0.66 +0.9 382,390 + PGA1_c03950 0.66 +0.4 382,390 + PGA1_c03950 0.66 +0.4 382,390 + PGA1_c03950 0.66 +1.8 382,390 + PGA1_c03950 0.66 +0.1 382,413 - PGA1_c03950 0.68 +1.8 382,475 + PGA1_c03950 0.74 +2.0 382,483 - PGA1_c03950 0.75 +0.1 382,488 + PGA1_c03950 0.75 +1.1 382,494 + PGA1_c03950 0.76 +2.3 382,494 + PGA1_c03950 0.76 +1.3 382,543 + PGA1_c03950 0.80 +0.7 382,546 - PGA1_c03950 0.81 -0.6 382,576 + PGA1_c03950 0.83 +1.4 382,588 + PGA1_c03950 0.84 +1.2 382,599 + PGA1_c03950 0.85 +0.9 382,606 + PGA1_c03950 0.86 +0.8 382,674 + +0.5 382,704 - +0.9 382,708 - +0.9 382,746 + -0.1 382,777 + +1.4 382,783 + +1.5 382,783 + +1.9 382,783 + +0.9 382,791 - +0.7 383,012 + PGA1_c03960 0.17 +1.1 383,132 + PGA1_c03960 0.24 +1.5 383,140 - PGA1_c03960 0.25 +0.7 383,178 + PGA1_c03960 0.27 +2.0 383,178 + PGA1_c03960 0.27 +1.0 383,180 + PGA1_c03960 0.28 +1.0 383,188 - PGA1_c03960 0.28 +1.7 383,235 + PGA1_c03960 0.31 +1.1 383,243 - PGA1_c03960 0.32 +0.9 383,243 - PGA1_c03960 0.32 +1.3 383,352 + PGA1_c03960 0.39 -0.1 383,355 - PGA1_c03960 0.39 +0.6 383,367 - PGA1_c03960 0.40 +1.0 383,367 - PGA1_c03960 0.40 +0.1 383,406 + PGA1_c03960 0.42 +0.5 383,414 - PGA1_c03960 0.43 +1.3 383,476 + PGA1_c03960 0.47 -0.3 383,476 + PGA1_c03960 0.47 +1.1 383,484 - PGA1_c03960 0.47 +1.1 383,494 + PGA1_c03960 0.48 +0.4 383,502 - PGA1_c03960 0.49 +0.7 383,556 + PGA1_c03960 0.52 +0.9 383,564 + PGA1_c03960 0.53 +1.1 383,572 - PGA1_c03960 0.53 +0.7 383,631 + PGA1_c03960 0.57 +0.7 383,639 - PGA1_c03960 0.58 -0.0 383,687 + PGA1_c03960 0.61 +2.2 383,695 - PGA1_c03960 0.61 +0.7 383,695 - PGA1_c03960 0.61 -1.5 383,695 - PGA1_c03960 0.61 +1.7 383,697 + PGA1_c03960 0.61 +2.3 383,730 - PGA1_c03960 0.64 +0.2 383,733 + PGA1_c03960 0.64 +2.1 383,748 - PGA1_c03960 0.65 +1.2 383,756 - PGA1_c03960 0.65 +3.0
Or see this region's nucleotide sequence